Variant report

Variant	rs11211538
Chromosome Location	chr1:47940080-47940081
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10789508	0.95[ASN][1000 genomes]
rs12035995	0.81[CHB][hapmap]
rs12046016	0.93[ASN][1000 genomes]
rs3814005	0.81[CHB][hapmap]
rs533894	0.98[ASN][1000 genomes]
rs6689636	0.93[ASN][1000 genomes]
rs72902514	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47934400-47950600	Weak transcription	Right Atrium	heart
2	chr1:47935000-47943400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:47935000-47943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:47935000-47943600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:47936000-47945400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:47937000-47942600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:47939800-47940200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr1:47939800-47940600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:47939800-47940600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:47940000-47940600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:47940000-47940600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:47940000-47943400	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links