Variant report

Variant	rs6689636
Chromosome Location	chr1:47926022-47926023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47921416..47925301-chr1:47925972..47930425,4	K562	blood:
2	chr1:47923815..47926431-chr1:47927655..47930925,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10789508	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211538	0.93[ASN][1000 genomes]
rs12035995	0.80[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes]
rs12036198	0.86[AMR][1000 genomes]
rs12046016	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404237	0.90[AMR][1000 genomes]
rs17103251	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17103253	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3814005	0.80[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.88[AMR][1000 genomes]
rs4600090	0.83[GIH][hapmap]
rs4926858	0.80[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.89[AMR][1000 genomes]
rs4926865	0.91[AMR][1000 genomes]
rs4926870	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4926871	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs533894	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs545670	0.83[AMR][1000 genomes]
rs6665045	0.91[AMR][1000 genomes]
rs6666370	0.80[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap]
rs6673789	0.86[AMR][1000 genomes]
rs6674100	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6690084	0.83[GIH][hapmap]
rs6697911	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72902514	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870357	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47922800-47926400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:47923600-47926400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr1:47924200-47926200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr1:47924200-47926400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr1:47924800-47926200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:47924800-47926400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
7	chr1:47925000-47926200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:47925000-47926400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:47925200-47926400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:47925400-47926400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr1:47925800-47926400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr1:47925800-47934200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:47926000-47926200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr1:47926000-47926400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links