Variant report

Variant	rs545670
Chromosome Location	chr1:47942422-47942423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10789508	0.83[AMR][1000 genomes]
rs12046016	0.83[AMR][1000 genomes]
rs17103253	0.81[AMR][1000 genomes]
rs2065946	1.00[GIH][hapmap]
rs4600090	0.81[TSI][hapmap]
rs542758	0.92[ASN][1000 genomes]
rs6689636	0.83[AMR][1000 genomes]
rs6690084	0.81[TSI][hapmap]
rs6697911	0.81[AMR][1000 genomes]
rs72902514	0.83[AMR][1000 genomes]
rs7528714	1.00[GIH][hapmap]
rs7547288	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47934400-47950600	Weak transcription	Right Atrium	heart
2	chr1:47935000-47943400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:47935000-47943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:47935000-47943600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:47936000-47945400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:47937000-47942600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:47940000-47943400	Enhancers	Stomach Mucosa	stomach
8	chr1:47941800-47943000	Weak transcription	Fetal Kidney	kidney
9	chr1:47942000-47946800	Enhancers	Liver	Liver
10	chr1:47942200-47943000	Enhancers	A549	lung
11	chr1:47942400-47943000	Weak transcription	Adipose Nuclei	Adipose
12	chr1:47942400-47944800	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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