Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47931303..47933156-chr1:47933454..47935118,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11211538	0.95[ASN][1000 genomes]
rs12035995	0.93[AMR][1000 genomes]
rs12036198	0.86[AMR][1000 genomes]
rs12046016	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12404237	0.90[AMR][1000 genomes]
rs17103251	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17103253	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3814005	0.88[AMR][1000 genomes]
rs4926858	0.89[AMR][1000 genomes]
rs4926865	0.91[AMR][1000 genomes]
rs4926870	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4926871	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs533894	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs545670	0.83[AMR][1000 genomes]
rs6665045	0.91[AMR][1000 genomes]
rs6673789	0.86[AMR][1000 genomes]
rs6674100	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6689636	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6697911	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72902514	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs870357	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47925800-47934200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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