Variant report

Variant	rs6673789
Chromosome Location	chr1:47879762-47879763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10789508	0.86[AMR][1000 genomes]
rs12031011	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12035995	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12036198	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12046016	0.83[AMR][1000 genomes]
rs12404237	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17103251	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103253	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3814005	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4926858	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4926865	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4926870	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4926871	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6665045	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6674100	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6689636	0.86[AMR][1000 genomes]
rs6697911	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72902514	0.86[AMR][1000 genomes]
rs870357	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871961	chr1:47875627-47912628	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47878000-47882000	Weak transcription	HSMM	muscle
2	chr1:47879200-47879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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