Variant report

Variant	rs11211946
Chromosome Location	chr11:106725302-106725303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10789553	0.84[ASN][1000 genomes]
rs10789554	0.81[ASN][1000 genomes]
rs11211918	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11211921	0.84[EUR][1000 genomes]
rs11211926	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11211927	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11211933	0.85[EUR][1000 genomes]
rs11211955	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11211956	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11211974	0.82[AFR][1000 genomes]
rs11211982	0.82[AFR][1000 genomes]
rs11211983	0.82[AFR][1000 genomes]
rs1940385	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1944196	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1944208	0.82[AFR][1000 genomes]
rs1944210	0.82[ASN][1000 genomes]
rs4523665	0.82[AFR][1000 genomes]
rs4620686	0.82[AFR][1000 genomes]
rs7929737	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1036990	chr11:106718613-106774766	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv541162	chr11:106718613-106774766	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106719200-106730400	Weak transcription	Fetal Lung	lung
2	chr11:106724600-106725600	ZNF genes & repeats	Fetal Stomach	stomach
3	chr11:106724600-106726000	ZNF genes & repeats	Pancreas	Pancrea
4	chr11:106724800-106725400	ZNF genes & repeats	Spleen	Spleen
5	chr11:106724800-106725600	Weak transcription	Right Ventricle	heart
6	chr11:106724800-106726000	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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