Variant report

Variant	rs11212237
Chromosome Location	chr11:107310213-107310214
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10458952	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212172	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11212191	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212198	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11212204	0.83[ASN][1000 genomes]
rs11212208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212209	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212210	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212212	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212213	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212214	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212215	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212216	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212218	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212221	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212222	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212225	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212226	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212227	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212228	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212230	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11212231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212241	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212243	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212244	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212245	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212246	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212248	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12224202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225955	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274630	0.83[ASN][1000 genomes]
rs17106918	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106969	0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17587175	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17663749	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2276271	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs474053	0.95[ASN][1000 genomes]
rs501919	0.95[ASN][1000 genomes]
rs524764	0.95[ASN][1000 genomes]
rs535629	0.95[ASN][1000 genomes]
rs546363	0.82[ASN][1000 genomes]
rs576672	0.82[ASN][1000 genomes]
rs603918	0.95[ASN][1000 genomes]
rs608352	0.98[ASN][1000 genomes]
rs612080	0.93[ASN][1000 genomes]
rs618078	0.82[ASN][1000 genomes]
rs629755	0.85[ASN][1000 genomes]
rs643392	0.82[ASN][1000 genomes]
rs645538	0.82[ASN][1000 genomes]
rs654272	0.82[ASN][1000 genomes]
rs658584	0.93[ASN][1000 genomes]
rs7121072	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs784150	0.82[ASN][1000 genomes]
rs7925025	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945950	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7949914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv832261	chr11:107145901-107321562	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv898375	chr11:107299631-107365191	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107241600-107327800	Weak transcription	HSMMtube	muscle
2	chr11:107252600-107323800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:107255000-107327600	Weak transcription	Fetal Heart	heart
4	chr11:107256600-107327600	Weak transcription	NHDF-Ad	bronchial
5	chr11:107258800-107324200	Weak transcription	Small Intestine	intestine
6	chr11:107259600-107323400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:107262200-107324000	Weak transcription	Pancreas	Pancrea
8	chr11:107263200-107310400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:107263600-107310600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:107268600-107312200	Weak transcription	K562	blood
11	chr11:107268600-107323400	Weak transcription	Gastric	stomach
12	chr11:107269000-107324600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:107270000-107312400	Weak transcription	Brain Germinal Matrix	brain
14	chr11:107272600-107312600	Weak transcription	Fetal Brain Female	brain
15	chr11:107274400-107312600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:107274600-107312600	Weak transcription	Lung	lung
17	chr11:107274600-107323400	Weak transcription	Esophagus	oesophagus
18	chr11:107275600-107314800	Weak transcription	NHEK	skin
19	chr11:107286600-107322800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:107291400-107324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:107292800-107327600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:107294200-107317800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:107296400-107323600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:107296800-107325600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:107297200-107324400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:107298200-107310400	Weak transcription	NH-A	brain
27	chr11:107298200-107327400	Weak transcription	A549	lung
28	chr11:107298800-107312200	Weak transcription	HepG2	liver
29	chr11:107298800-107312400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:107299600-107314800	Weak transcription	Fetal Kidney	kidney
31	chr11:107300200-107310400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:107300200-107323200	Weak transcription	HSMM	muscle
33	chr11:107300400-107324200	Weak transcription	NHLF	lung
34	chr11:107300400-107326800	Weak transcription	Hela-S3	cervix
35	chr11:107301000-107326800	Weak transcription	HMEC	breast
36	chr11:107305000-107319600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:107306800-107313600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:107306800-107318200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:107307000-107318800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:107307000-107319400	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:107307200-107313200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:107307400-107315800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:107307400-107323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:107307400-107323400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:107307600-107323200	Weak transcription	Osteobl	bone
46	chr11:107307800-107313600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:107307800-107313800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:107307800-107323400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:107307800-107323400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:107307800-107326800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links