Variant report

Variant	rs629755
Chromosome Location	chr11:107326665-107326666
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107321719..107323399-chr11:107326158..107328000,2	MCF-7	breast:
2	chr11:107321712..107323606-chr11:107324966..107327081,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10458952	0.85[ASN][1000 genomes]
rs11212198	0.83[ASN][1000 genomes]
rs11212208	0.85[ASN][1000 genomes]
rs11212209	0.85[ASN][1000 genomes]
rs11212210	0.85[ASN][1000 genomes]
rs11212212	0.85[ASN][1000 genomes]
rs11212213	0.85[ASN][1000 genomes]
rs11212214	0.85[ASN][1000 genomes]
rs11212215	0.85[ASN][1000 genomes]
rs11212216	0.85[ASN][1000 genomes]
rs11212218	0.85[ASN][1000 genomes]
rs11212221	0.85[ASN][1000 genomes]
rs11212222	0.85[ASN][1000 genomes]
rs11212225	0.85[ASN][1000 genomes]
rs11212226	0.82[ASN][1000 genomes]
rs11212227	0.82[ASN][1000 genomes]
rs11212228	0.82[ASN][1000 genomes]
rs11212229	0.85[ASN][1000 genomes]
rs11212230	0.83[ASN][1000 genomes]
rs11212231	0.86[ASN][1000 genomes]
rs11212232	0.86[ASN][1000 genomes]
rs11212233	0.82[ASN][1000 genomes]
rs11212234	0.82[ASN][1000 genomes]
rs11212237	0.85[ASN][1000 genomes]
rs11212238	0.82[EUR][1000 genomes]
rs11212239	0.85[ASN][1000 genomes]
rs11212241	0.98[ASN][1000 genomes]
rs11212243	0.98[ASN][1000 genomes]
rs11212244	0.98[ASN][1000 genomes]
rs11212245	0.98[ASN][1000 genomes]
rs11212246	0.98[ASN][1000 genomes]
rs11212248	0.95[ASN][1000 genomes]
rs12224202	0.85[ASN][1000 genomes]
rs12225955	0.85[ASN][1000 genomes]
rs12274630	0.95[ASN][1000 genomes]
rs12362330	0.82[EUR][1000 genomes]
rs1263297	0.81[EUR][1000 genomes]
rs17106918	0.85[ASN][1000 genomes]
rs17106969	0.95[ASN][1000 genomes]
rs2276271	0.98[ASN][1000 genomes]
rs2432867	0.82[EUR][1000 genomes]
rs34846704	0.82[EUR][1000 genomes]
rs474053	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs476028	0.82[EUR][1000 genomes]
rs480609	0.81[EUR][1000 genomes]
rs487705	0.81[EUR][1000 genomes]
rs501919	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs504617	0.82[EUR][1000 genomes]
rs510528	0.82[EUR][1000 genomes]
rs514117	0.82[EUR][1000 genomes]
rs517734	0.82[EUR][1000 genomes]
rs518580	0.82[EUR][1000 genomes]
rs524764	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs526875	0.82[EUR][1000 genomes]
rs527801	0.81[EUR][1000 genomes]
rs528337	0.82[EUR][1000 genomes]
rs529341	0.82[EUR][1000 genomes]
rs535629	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs536636	0.82[EUR][1000 genomes]
rs537563	0.82[EUR][1000 genomes]
rs541782	0.81[EUR][1000 genomes]
rs546363	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs548049	0.81[EUR][1000 genomes]
rs549909	0.82[EUR][1000 genomes]
rs554506	0.82[EUR][1000 genomes]
rs570235	0.81[EUR][1000 genomes]
rs576672	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs584778	0.82[EUR][1000 genomes]
rs588678	0.82[EUR][1000 genomes]
rs589415	0.82[EUR][1000 genomes]
rs596268	0.82[EUR][1000 genomes]
rs599677	0.82[EUR][1000 genomes]
rs602625	0.82[EUR][1000 genomes]
rs603918	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs608352	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs612080	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs618078	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs619933	0.82[EUR][1000 genomes]
rs626091	0.81[EUR][1000 genomes]
rs627440	0.82[EUR][1000 genomes]
rs628609	0.82[EUR][1000 genomes]
rs632910	0.81[EUR][1000 genomes]
rs632942	0.81[EUR][1000 genomes]
rs633543	0.81[EUR][1000 genomes]
rs643392	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs644954	0.81[EUR][1000 genomes]
rs645538	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs649331	0.81[EUR][1000 genomes]
rs652429	0.82[EUR][1000 genomes]
rs654272	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs658584	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs659040	0.82[EUR][1000 genomes]
rs661085	0.81[EUR][1000 genomes]
rs664836	0.82[EUR][1000 genomes]
rs667198	0.82[EUR][1000 genomes]
rs668415	0.82[EUR][1000 genomes]
rs673267	0.82[EUR][1000 genomes]
rs67428239	0.81[EUR][1000 genomes]
rs784149	0.82[EUR][1000 genomes]
rs784150	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7924335	0.82[EUR][1000 genomes]
rs7925025	0.85[ASN][1000 genomes]
rs7945950	0.95[ASN][1000 genomes]
rs7949914	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv898375	chr11:107299631-107365191	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898377	chr11:107316499-107354312	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv2757476	chr11:107324276-107344568	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv2759864	chr11:107324276-107344568	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107241600-107327800	Weak transcription	HSMMtube	muscle
2	chr11:107255000-107327600	Weak transcription	Fetal Heart	heart
3	chr11:107256600-107327600	Weak transcription	NHDF-Ad	bronchial
4	chr11:107292800-107327600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:107298200-107327400	Weak transcription	A549	lung
6	chr11:107300400-107326800	Weak transcription	Hela-S3	cervix
7	chr11:107301000-107326800	Weak transcription	HMEC	breast
8	chr11:107307800-107326800	Weak transcription	Fetal Brain Male	brain
9	chr11:107311000-107327400	Weak transcription	Psoas Muscle	Psoas
10	chr11:107313000-107327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:107313400-107327600	Weak transcription	Brain Substantia Nigra	brain
12	chr11:107315400-107326800	Weak transcription	NHEK	skin
13	chr11:107317000-107326800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:107323800-107327800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:107324400-107327800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:107324800-107326800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:107325000-107326800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:107325000-107326800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:107325000-107326800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:107325000-107326800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:107325000-107326800	Weak transcription	Brain Anterior Caudate	brain
22	chr11:107325000-107326800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:107325000-107326800	Weak transcription	Fetal Stomach	stomach
24	chr11:107325000-107326800	Weak transcription	Fetal Thymus	thymus
25	chr11:107325000-107326800	Weak transcription	Small Intestine	intestine
26	chr11:107325000-107326800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:107325000-107326800	Weak transcription	Thymus	Thymus
28	chr11:107325000-107327000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:107325000-107327000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:107325000-107327000	Weak transcription	Primary T cells from cord blood	blood
31	chr11:107325000-107327000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:107325000-107327000	Weak transcription	Fetal Lung	lung
33	chr11:107325000-107327400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:107325000-107327400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:107325000-107327400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:107325000-107327400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:107325000-107327400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:107325000-107327400	Weak transcription	Fetal Intestine Large	intestine
39	chr11:107325000-107327600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:107325000-107327600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:107325000-107327600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:107325000-107327600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:107325000-107327600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:107325000-107327600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr11:107325000-107327600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:107325000-107327600	Weak transcription	Fetal Intestine Small	intestine
47	chr11:107325000-107327600	Weak transcription	Fetal Kidney	kidney
48	chr11:107325000-107327600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr11:107325000-107327600	Weak transcription	Ovary	ovary
50	chr11:107325000-107327600	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links