Variant report

Variant	rs17106969
Chromosome Location	chr11:107327922-107327923
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107311896..107313858-chr11:107327138..107329604,2	K562	blood:
2	chr11:107317031..107320685-chr11:107326705..107328538,3	K562	blood:
3	chr11:107321719..107323399-chr11:107326158..107328000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152404	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10458952	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212172	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11212198	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11212208	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212209	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212210	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212212	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212213	0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212214	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212215	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212216	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212218	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212221	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212222	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212225	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212226	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212228	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212229	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212230	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212231	0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11212232	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11212233	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11212234	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11212237	0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212239	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11212241	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212243	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212244	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212245	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212246	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11212248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224202	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12225955	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12274630	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106918	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17587175	0.86[JPT][hapmap]
rs17663749	0.82[JPT][hapmap]
rs2276271	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs474053	0.85[ASN][1000 genomes]
rs501919	0.85[ASN][1000 genomes]
rs524764	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs535629	0.85[ASN][1000 genomes]
rs546363	0.98[ASN][1000 genomes]
rs56196921	0.86[AFR][1000 genomes]
rs56380322	0.86[AFR][1000 genomes]
rs576672	0.98[ASN][1000 genomes]
rs58259794	0.86[AFR][1000 genomes]
rs59648476	0.86[AFR][1000 genomes]
rs59887231	0.86[AFR][1000 genomes]
rs603918	0.85[ASN][1000 genomes]
rs608352	0.82[ASN][1000 genomes]
rs612080	0.87[ASN][1000 genomes]
rs618078	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs629755	0.95[ASN][1000 genomes]
rs643392	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs645538	0.98[ASN][1000 genomes]
rs654272	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs658584	0.87[ASN][1000 genomes]
rs784150	0.98[ASN][1000 genomes]
rs7925025	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7945950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949914	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv898375	chr11:107299631-107365191	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898377	chr11:107316499-107354312	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv2757476	chr11:107324276-107344568	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv2759864	chr11:107324276-107344568	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107325000-107328000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:107325000-107328000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:107325000-107328000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:107325000-107328000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:107325000-107328000	Weak transcription	Esophagus	oesophagus
6	chr11:107325000-107328000	Weak transcription	Gastric	stomach
7	chr11:107325000-107328000	Weak transcription	Lung	lung
8	chr11:107325000-107328000	Weak transcription	Pancreas	Pancrea
9	chr11:107325000-107328000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:107325000-107328000	Weak transcription	Spleen	Spleen
11	chr11:107326600-107328000	Flanking Active TSS	Dnd41	blood
12	chr11:107326600-107328000	Active TSS	HepG2	liver
13	chr11:107326800-107328000	Enhancers	Small Intestine	intestine
14	chr11:107326800-107328200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:107326800-107329000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr11:107326800-107329200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:107326800-107329200	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:107326800-107329200	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr11:107326800-107329400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:107326800-107329400	Active TSS	GM12878-XiMat	blood
21	chr11:107327000-107329000	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr11:107327000-107329200	Active TSS	K562	blood
23	chr11:107327200-107328400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:107327200-107329200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:107327400-107328000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:107327400-107328000	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr11:107327400-107329000	Active TSS	HSMM	muscle
28	chr11:107327400-107329200	Active TSS	H1 Cell Line	embryonic stem cell
29	chr11:107327400-107329200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:107327400-107329200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:107327400-107329200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:107327400-107329200	Active TSS	Psoas Muscle	Psoas
33	chr11:107327400-107329200	Active TSS	A549	lung
34	chr11:107327400-107329400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:107327600-107328000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:107327600-107328000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr11:107327600-107328000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr11:107327600-107328000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:107327600-107328000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr11:107327600-107328000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr11:107327600-107328000	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr11:107327600-107328000	Flanking Active TSS	Brain Substantia Nigra	brain
43	chr11:107327600-107328000	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr11:107327600-107328000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr11:107327600-107328000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr11:107327600-107328000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr11:107327600-107328000	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr11:107327600-107328000	Flanking Active TSS	Hela-S3	cervix
49	chr11:107327600-107328200	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr11:107327600-107328200	Flanking Active TSS	Primary hematopoietic stem cells	blood

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