Variant report

Variant	rs11212513
Chromosome Location	chr11:107976623-107976624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107960048..107962789-chr11:107975595..107977973,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12276853	1.00[AMR][1000 genomes]
rs12284751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295056	1.00[AMR][1000 genomes]
rs12421312	1.00[AMR][1000 genomes]
rs13377275	1.00[AMR][1000 genomes]
rs3847563	1.00[AMR][1000 genomes]
rs3908130	1.00[AMR][1000 genomes]
rs4028252	1.00[AMR][1000 genomes]
rs4754291	1.00[AMR][1000 genomes]
rs7118566	1.00[AMR][1000 genomes]
rs7931791	1.00[AMR][1000 genomes]
rs7935031	1.00[AMR][1000 genomes]
rs7947012	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
3	chr11:107946600-107986000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:107953200-107991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:107953600-107986000	Weak transcription	Pancreas	Pancrea
6	chr11:107955800-107991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:107958400-107977200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:107958600-107978200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:107958800-107980400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:107959000-107977000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:107959200-107977000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:107959200-107977800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:107960000-107977000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:107961400-107977800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:107961600-107976800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:107962200-107977000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:107962800-107977600	Weak transcription	Esophagus	oesophagus
18	chr11:107964000-107976800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:107964000-107977200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:107964000-107978600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:107964600-107978000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:107965400-107977200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr11:107965600-107976800	Strong transcription	Liver	Liver
24	chr11:107965800-107977200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:107966200-107982200	Weak transcription	Spleen	Spleen
26	chr11:107966200-107986000	Weak transcription	Brain Substantia Nigra	brain
27	chr11:107966400-107992000	Weak transcription	Fetal Brain Male	brain
28	chr11:107966600-107986000	Weak transcription	HMEC	breast
29	chr11:107967000-107991400	Weak transcription	A549	lung
30	chr11:107968200-107986000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:107968200-107986800	Weak transcription	Colonic Mucosa	Colon
32	chr11:107968200-107992000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:107968600-107978000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:107968600-107986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:107969000-107991600	Weak transcription	Hela-S3	cervix
36	chr11:107969200-107978200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:107969200-107986000	Weak transcription	NHLF	lung
38	chr11:107969200-107986200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:107969200-107991800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:107970400-107979400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:107970600-107991600	Weak transcription	HepG2	liver
42	chr11:107971600-107977200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:107971800-107976800	Strong transcription	HSMM	muscle
44	chr11:107972200-107986000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:107972400-107985000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:107972400-107986400	Weak transcription	NHEK	skin
47	chr11:107972400-107991400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:107972400-107991600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:107972400-107992000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:107972600-107977400	Weak transcription	K562	blood

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