Variant report

Variant	rs4028252
Chromosome Location	chr11:107884245-107884246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107883045..107885752-chr11:107885908..107888287,2	MCF-7	breast:
2	chr11:107883375..107885930-chr11:107898128..107900302,2	K562	blood:
3	chr11:107878216..107881089-chr11:107881577..107884403,2	MCF-7	breast:
4	chr11:107879275..107881405-chr11:107882359..107886354,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166266	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11212513	1.00[AMR][1000 genomes]
rs12276853	1.00[AMR][1000 genomes]
rs12284751	1.00[AMR][1000 genomes]
rs12286340	1.00[AMR][1000 genomes]
rs12290187	1.00[AMR][1000 genomes]
rs12295056	1.00[AMR][1000 genomes]
rs12421312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377275	1.00[AMR][1000 genomes]
rs2056268	0.90[AFR][1000 genomes]
rs3847563	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3858393	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs3858397	1.00[ASW][hapmap];0.89[MKK][hapmap]
rs3908130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4754291	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118566	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121079	0.82[AFR][1000 genomes]
rs7931791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935031	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947012	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1040345	chr11:107824764-107924309	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107879000-107885200	Active TSS	GM12878-XiMat	blood
2	chr11:107880800-107888400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:107880800-107890600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:107881000-107884800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:107881000-107885000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr11:107881000-107886200	Weak transcription	Pancreas	Pancrea
7	chr11:107881000-107891000	Weak transcription	Lung	lung
8	chr11:107881000-107904000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:107881000-107904800	Weak transcription	Placenta	Placenta
10	chr11:107881200-107884400	Enhancers	Fetal Brain Male	brain
11	chr11:107881200-107884800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:107881200-107885000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:107881200-107885200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr11:107881200-107885200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:107881200-107886800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:107881200-107887200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:107881200-107890000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:107881200-107890600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:107881400-107884800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr11:107881400-107885000	Enhancers	Brain Anterior Caudate	brain
21	chr11:107881600-107884400	Enhancers	Primary T cells from cord blood	blood
22	chr11:107881600-107884800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:107881600-107885000	Enhancers	Adipose Nuclei	Adipose
24	chr11:107881600-107896200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:107881600-107904600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:107881800-107884400	Weak transcription	Fetal Thymus	thymus
27	chr11:107881800-107884800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:107881800-107884800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:107881800-107885600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:107881800-107890400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:107882000-107884600	Enhancers	Brain Germinal Matrix	brain
32	chr11:107882000-107886800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:107882200-107884400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:107882200-107884600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:107882200-107884600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:107882200-107884800	Weak transcription	Brain Substantia Nigra	brain
37	chr11:107882200-107885200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:107882200-107885400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:107882200-107886400	Weak transcription	Fetal Brain Female	brain
40	chr11:107882200-107887000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:107882200-107887000	Weak transcription	Fetal Stomach	stomach
42	chr11:107882200-107888200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:107882200-107889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:107882200-107890000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:107882200-107890000	Weak transcription	Hela-S3	cervix
46	chr11:107882200-107890200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:107882200-107890600	Weak transcription	HSMMtube	muscle
48	chr11:107882200-107890600	Weak transcription	NHLF	lung
49	chr11:107882200-107894800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:107882200-107896200	Weak transcription	Rectal Mucosa Donor 31	rectum

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