Variant report

Variant	rs12276853
Chromosome Location	chr11:107908783-107908784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11212513	1.00[AMR][1000 genomes]
rs12284751	1.00[AMR][1000 genomes]
rs12286340	1.00[AMR][1000 genomes]
rs12290187	1.00[AMR][1000 genomes]
rs12295056	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12421312	1.00[AMR][1000 genomes]
rs13377275	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3847563	1.00[AMR][1000 genomes]
rs3908130	1.00[AMR][1000 genomes]
rs4028252	1.00[AMR][1000 genomes]
rs4754291	1.00[AMR][1000 genomes]
rs7118566	1.00[AMR][1000 genomes]
rs7931791	1.00[AMR][1000 genomes]
rs7935031	1.00[AMR][1000 genomes]
rs7947012	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1040345	chr11:107824764-107924309	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107882200-107917000	Weak transcription	NH-A	brain
2	chr11:107884400-107926200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:107884400-107942000	Weak transcription	Esophagus	oesophagus
4	chr11:107884800-107929200	Weak transcription	NHEK	skin
5	chr11:107890800-107926800	Weak transcription	Hela-S3	cervix
6	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
9	chr11:107891400-107914600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:107896400-107927400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:107896600-107917600	Weak transcription	Pancreas	Pancrea
12	chr11:107896600-107922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:107896600-107926600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
15	chr11:107898000-107924600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:107900000-107917800	Weak transcription	Gastric	stomach
17	chr11:107900000-107921000	Weak transcription	Stomach Mucosa	stomach
18	chr11:107901600-107913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:107901600-107913400	Strong transcription	Primary T cells from cord blood	blood
20	chr11:107901600-107933800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:107902400-107911800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr11:107902400-107918600	Weak transcription	HSMMtube	muscle
23	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:107902800-107916600	Weak transcription	HMEC	breast
25	chr11:107903000-107927800	Weak transcription	Fetal Brain Male	brain
26	chr11:107903400-107935200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:107903600-107909000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:107903800-107908800	Strong transcription	Primary B cells from cord blood	blood
30	chr11:107903800-107911000	Strong transcription	Primary hematopoietic stem cells	blood
31	chr11:107903800-107938000	Strong transcription	Dnd41	blood
32	chr11:107904000-107908800	Strong transcription	GM12878-XiMat	blood
33	chr11:107904000-107910600	Strong transcription	Fetal Brain Female	brain
34	chr11:107904000-107911000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:107904000-107911800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:107904200-107908800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:107904200-107909200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:107904200-107911000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:107904200-107924800	Weak transcription	Brain Substantia Nigra	brain
40	chr11:107904400-107908800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:107904400-107909000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:107904400-107910600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:107904400-107933800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:107904600-107909600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:107904600-107911200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:107904600-107911800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:107904600-107913800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:107904600-107920800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:107904800-107908800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:107904800-107909200	Strong transcription	Rectal Mucosa Donor 31	rectum

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