Variant report

Variant	rs11212640
Chromosome Location	chr11:108313339-108313340
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10431060	0.84[EUR][1000 genomes]
rs10431061	0.80[ASN][1000 genomes]
rs10789659	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890849	0.89[EUR][1000 genomes]
rs11212610	0.84[EUR][1000 genomes]
rs11212619	0.84[EUR][1000 genomes]
rs11212635	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11212659	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11212661	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs113995	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12792979	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12796446	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12801988	0.90[EUR][1000 genomes]
rs1583598	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs170547	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs172895	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs179109	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs184472	0.81[ASN][1000 genomes]
rs186594	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs186595	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2118308	0.85[ASN][1000 genomes]
rs227054	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs227064	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227066	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227067	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227070	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227075	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227077	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227085	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227086	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs227087	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs227088	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs227091	0.83[EUR][1000 genomes]
rs227092	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs227093	0.83[EUR][1000 genomes]
rs227094	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs374443	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3765632	0.95[EUR][1000 genomes]
rs3901851	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs425538	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4585	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754318	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754322	0.85[ASN][1000 genomes]
rs4754324	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5023001	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs573890	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs595747	0.81[ASN][1000 genomes]
rs605394	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60639858	0.85[ASN][1000 genomes]
rs60683001	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs609655	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61913892	0.92[EUR][1000 genomes]
rs61915104	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs652311	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs652541	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6589018	0.85[ASN][1000 genomes]
rs662218	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664143	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7111091	0.85[ASN][1000 genomes]
rs7112136	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7120845	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126588	0.86[EUR][1000 genomes]
rs7931930	0.83[EUR][1000 genomes]
rs7942014	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943607	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9667658	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11212640	ACAT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108310000-108317600	Weak transcription	Gastric	stomach

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