Variant report

Variant	rs227092
Chromosome Location	chr11:108236783-108236784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108235117..108237355-chr11:108238293..108240320,2	MCF-7	breast:

Extended variants
information (count: 197 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs1003623	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1003624	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10431060	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10431061	0.88[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10749918	1.00[YRI][hapmap]
rs10789659	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890834	1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap]
rs10890849	0.81[EUR][1000 genomes]
rs11212538	0.82[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes]
rs11212543	0.83[AMR][1000 genomes]
rs11212546	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs11212551	0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs11212579	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11212610	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212617	0.92[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs11212619	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11212635	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212636	0.81[ASN][1000 genomes]
rs11212637	0.81[ASN][1000 genomes]
rs11212638	0.81[ASN][1000 genomes]
rs11212640	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212659	0.85[EUR][1000 genomes]
rs113995	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150203	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11605442	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs12226046	0.82[JPT][hapmap]
rs12792979	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12796446	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12801988	0.82[EUR][1000 genomes]
rs1583598	0.92[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1607476	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs170547	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs170548	0.82[JPT][hapmap]
rs172894	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.86[TSI][hapmap]
rs172895	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs172896	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs172927	0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs179109	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179110	0.82[JPT][hapmap]
rs183459	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs183460	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes]
rs184472	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1850730	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes]
rs186591	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs186592	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs186593	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs186594	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs186595	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs189037	0.87[AMR][1000 genomes]
rs190131	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2028155	0.85[ASN][1000 genomes]
rs2056267	0.95[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2070661	0.84[CEU][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap]
rs2083707	0.88[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap]
rs2118308	0.86[ASN][1000 genomes]
rs2118309	0.84[CEU][hapmap]
rs227040	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227041	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227050	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs227053	0.92[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227054	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227055	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs227058	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs227060	0.82[JPT][hapmap]
rs227061	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227062	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227063	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs227064	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227066	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227067	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227068	0.94[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227069	0.90[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs227070	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227072	0.94[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227073	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227074	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227075	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227076	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227077	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227085	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs227086	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227087	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227088	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227091	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs227094	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228589	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs228590	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes]
rs228591	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes]
rs228592	0.89[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs228596	0.84[AMR][1000 genomes]
rs228597	0.82[AMR][1000 genomes]
rs228598	0.84[AMR][1000 genomes]
rs228599	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs228601	0.81[AMR][1000 genomes]
rs228606	0.86[CHB][hapmap]
rs228608	0.85[AMR][1000 genomes]
rs2356801	0.92[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs365288	0.87[ASN][1000 genomes]
rs373759	0.82[JPT][hapmap]
rs374443	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765632	0.92[CEU][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs3781868	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes]
rs3781869	0.85[AMR][1000 genomes]
rs3824987	0.82[CHD][hapmap]
rs3901851	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4027718	0.82[AMR][1000 genomes]
rs419716	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs425061	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs425538	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4585	1.00[ASW][hapmap];0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623864	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4753833	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs4753842	0.81[ASN][1000 genomes]
rs4754301	0.83[AMR][1000 genomes]
rs4754305	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4754318	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4754322	0.86[ASN][1000 genomes]
rs4754324	0.92[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987982	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs5023001	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs573890	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs582157	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs583725	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs592955	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs595747	0.92[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs597788	0.82[JPT][hapmap]
rs599164	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs599406	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs599558	0.89[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs600329	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs600691	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs600931	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs601111	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs605394	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs606275	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60639858	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60683001	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608086	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs609261	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs609429	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs609557	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs609655	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs611646	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs618499	0.92[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap]
rs61913892	0.84[EUR][1000 genomes]
rs61915104	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs619972	0.92[CEU][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs620613	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs621947	0.83[EUR][1000 genomes]
rs623860	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap]
rs624366	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs624888	0.83[AMR][1000 genomes]
rs625120	0.88[AMR][1000 genomes]
rs627418	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap]
rs634268	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs637064	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs641605	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes]
rs645485	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs647681	0.83[EUR][1000 genomes]
rs650128	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs650173	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs652311	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652541	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs654005	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6589007	0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs6589018	0.86[ASN][1000 genomes]
rs6589019	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs660429	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs662218	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs662578	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs664143	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs664677	0.92[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap]
rs664982	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs672655	0.92[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs672964	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs673281	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs676729	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs682131	0.81[ASN][1000 genomes]
rs694376	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs694799	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7112136	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118967	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap]
rs7120845	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7395528	0.83[AMR][1000 genomes]
rs7931930	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7942014	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7943063	0.86[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7943203	0.88[ASW][hapmap];0.93[CHD][hapmap]
rs7943607	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9667658	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs227092	ACAT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108212200-108241400	Weak transcription	Hela-S3	cervix
3	chr11:108212800-108238000	Weak transcription	HMEC	breast
4	chr11:108220200-108237000	Weak transcription	A549	lung
5	chr11:108222800-108242200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:108224200-108239200	Weak transcription	Small Intestine	intestine
7	chr11:108225400-108243200	Weak transcription	Fetal Heart	heart
8	chr11:108226000-108240200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:108226400-108241400	Weak transcription	Thymus	Thymus
10	chr11:108226400-108244200	Weak transcription	Psoas Muscle	Psoas
11	chr11:108226400-108244600	Weak transcription	Gastric	stomach
12	chr11:108226600-108242000	Weak transcription	Lung	lung
13	chr11:108226600-108257400	Weak transcription	Right Ventricle	heart
14	chr11:108226800-108236800	Weak transcription	Colonic Mucosa	Colon
15	chr11:108226800-108237200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:108226800-108239000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:108226800-108239000	Weak transcription	Esophagus	oesophagus
18	chr11:108226800-108241400	Weak transcription	Aorta	Aorta
19	chr11:108226800-108241400	Weak transcription	NHEK	skin
20	chr11:108226800-108242800	Weak transcription	Placenta	Placenta
21	chr11:108226800-108243400	Weak transcription	Fetal Brain Male	brain
22	chr11:108227000-108238600	Weak transcription	Brain Substantia Nigra	brain
23	chr11:108227000-108239200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:108227000-108239400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:108227200-108240800	Weak transcription	Pancreas	Pancrea
26	chr11:108227200-108241400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:108227600-108237800	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:108227600-108240400	Weak transcription	GM12878-XiMat	blood
29	chr11:108227600-108243200	Weak transcription	NH-A	brain
30	chr11:108227600-108245600	Weak transcription	Fetal Brain Female	brain
31	chr11:108227800-108237400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:108227800-108237800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:108227800-108239000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:108227800-108239000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:108227800-108239600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:108227800-108242000	Weak transcription	Brain Germinal Matrix	brain
37	chr11:108227800-108242800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr11:108227800-108243400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:108227800-108243400	Weak transcription	Brain Angular Gyrus	brain
40	chr11:108227800-108243800	Weak transcription	Fetal Kidney	kidney
41	chr11:108227800-108244200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:108227800-108245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:108228200-108239400	Weak transcription	Fetal Stomach	stomach
44	chr11:108233600-108238600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:108233800-108238600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:108233800-108240000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:108233800-108240200	Strong transcription	Primary T cells from cord blood	blood
48	chr11:108233800-108242400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:108234000-108241000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:108234000-108242800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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