Variant report

Variant	rs2083707
Chromosome Location	chr11:108066130-108066131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108058768..108062764-chr11:108063475..108066750,3	K562	blood:
2	chr11:108032589..108034763-chr11:108065558..108067733,2	K562	blood:
3	chr11:108046670..108049307-chr11:108065336..108067903,2	K562	blood:
4	chr11:108058716..108061804-chr11:108062669..108067436,4	K562	blood:
5	chr11:108063429..108067423-chr11:108068069..108071362,4	K562	blood:

Variant related genes	Relation type
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1003623	0.84[EUR][1000 genomes]
rs1003624	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10789656	0.87[EUR][1000 genomes]
rs10789659	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs10890821	0.84[EUR][1000 genomes]
rs10890822	0.83[ASN][1000 genomes]
rs11212525	0.86[JPT][hapmap]
rs11212538	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11212542	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11212543	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11212546	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212551	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11212579	0.87[EUR][1000 genomes]
rs113995	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1150203	0.84[EUR][1000 genomes]
rs11605442	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12272183	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575358	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12787445	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1519073	0.82[JPT][hapmap]
rs1550609	0.82[JPT][hapmap]
rs1607476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs172894	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap]
rs172896	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs172927	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs183459	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183460	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1850730	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs186593	0.90[JPT][hapmap]
rs186595	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs189037	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1893812	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1893813	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1973723	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2056267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2070661	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227040	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227041	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227053	0.96[CEU][hapmap]
rs227054	0.84[AMR][1000 genomes]
rs227055	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap]
rs227058	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs227061	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227062	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap]
rs227063	0.80[AMR][1000 genomes]
rs227064	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs227066	0.87[AMR][1000 genomes]
rs227067	0.84[AMR][1000 genomes]
rs227068	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227069	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs227070	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227072	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227073	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227074	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227075	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227077	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227087	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227092	0.88[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap]
rs228588	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228589	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs228590	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228591	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228592	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs228594	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228596	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs228597	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228598	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228599	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228601	0.84[EUR][1000 genomes]
rs228606	0.91[CHB][hapmap]
rs228607	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs228608	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs374443	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes]
rs3781868	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781869	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4027718	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs419716	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs425538	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs4585	0.89[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap]
rs4623864	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4753833	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754299	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754301	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4754305	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754306	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4987982	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs573890	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap]
rs582157	0.81[EUR][1000 genomes]
rs583725	0.84[EUR][1000 genomes]
rs592955	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs594153	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs595747	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs599164	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs599406	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs599558	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs600329	0.84[EUR][1000 genomes]
rs600691	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs600931	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs601111	0.84[EUR][1000 genomes]
rs606275	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs608086	0.83[EUR][1000 genomes]
rs609261	0.96[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs609557	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609655	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap]
rs611646	0.86[CHB][hapmap]
rs618499	0.96[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs619972	0.96[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs620613	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs621947	0.87[EUR][1000 genomes]
rs623860	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624366	0.96[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.84[EUR][1000 genomes]
rs624852	0.89[AMR][1000 genomes]
rs625120	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs627418	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.88[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs634268	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs637064	0.88[EUR][1000 genomes]
rs641312	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs641605	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs642496	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs645485	0.96[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs647681	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs650128	0.83[EUR][1000 genomes]
rs650173	0.83[EUR][1000 genomes]
rs652311	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs652541	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs654005	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6589004	0.83[ASN][1000 genomes]
rs6589007	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6589008	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs660429	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs661467	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs662218	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs662578	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs664143	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs664677	0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs672655	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs672964	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs673281	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs676729	0.83[EUR][1000 genomes]
rs679782	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs694376	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs694799	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7118967	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7395528	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931681	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7932972	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7948117	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2083707	ACAT1	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:108009400-108068400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:108009600-108068200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:108017000-108075000	Strong transcription	Dnd41	blood
8	chr11:108024800-108070400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
10	chr11:108026800-108071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:108027000-108069800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr11:108028800-108068000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:108029200-108067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:108039400-108068200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:108040400-108074000	Weak transcription	Fetal Brain Male	brain
17	chr11:108040800-108069600	Weak transcription	Psoas Muscle	Psoas
18	chr11:108041600-108074000	Weak transcription	Small Intestine	intestine
19	chr11:108041800-108068000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:108042400-108068000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:108042400-108068000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:108042400-108068200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:108042600-108069000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:108042600-108069200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:108042800-108066800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:108042800-108068000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:108043000-108066400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:108043000-108067600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:108043400-108070600	Weak transcription	A549	lung
30	chr11:108044600-108070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:108046200-108069600	Weak transcription	Stomach Mucosa	stomach
32	chr11:108046400-108070200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr11:108046600-108067600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:108048200-108066600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:108048600-108068200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:108048800-108068600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:108050000-108067600	Strong transcription	Adipose Nuclei	Adipose
38	chr11:108050000-108068400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:108050000-108074800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:108050400-108066600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:108050400-108067200	Strong transcription	Placenta	Placenta
42	chr11:108050400-108067800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:108053000-108067400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr11:108053200-108066200	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr11:108053600-108069400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:108053600-108069400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
48	chr11:108055000-108068200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:108055400-108067800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr11:108055600-108069600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links