Variant report

Variant	rs228590
Chromosome Location	chr11:108096141-108096142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:108096019-108096560	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:108096004-108096548	GM12892	blood:	n/a	n/a
3	MAFK	chr11:108096023-108096290	K562	blood:	n/a	n/a
4	POLR2A	chr11:108095957-108096702	GM12892	blood:	n/a	n/a
5	POLR2A	chr11:108091677-108096659	GM12891	blood:	n/a	n/a
6	FOXM1	chr11:108095635-108096552	GM12878	blood:	n/a	n/a
7	PAX5	chr11:108096099-108096383	GM12878	blood:	n/a	n/a
8	IRF1	chr11:108095705-108096268	K562	blood:	n/a	chr11:108095904-108095921 chr11:108095908-108095922 chr11:108095907-108095920 chr11:108095907-108095918 chr11:108095906-108095926 chr11:108095902-108095919 chr11:108095907-108095921 chr11:108095907-108095920 chr11:108095906-108095917 chr11:108095907-108095920 chr11:108095906-108095920 chr11:108095908-108095918
9	FOXM1	chr11:108095802-108096685	GM12878	blood:	n/a	n/a
10	EP300	chr11:108095902-108096343	GM12878	blood:	n/a	chr11:108095994-108096008
11	POLR2A	chr11:108096112-108096477	GM12891	blood:	n/a	n/a
12	POLR2A	chr11:108096068-108096594	GM12891	blood:	n/a	n/a
13	CHD2	chr11:108095919-108096455	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:108096010-108096639	GM12878	blood:	n/a	n/a
15	EP300	chr11:108095792-108096373	GM12878	blood:	n/a	chr11:108095994-108096008
16	CUX1	chr11:108095968-108096222	GM12878	blood:	n/a	n/a
17	CUX1	chr11:108095847-108096198	K562	blood:	n/a	n/a
18	EP300	chr11:108095992-108096338	GM12878	blood:	n/a	chr11:108095994-108096008
19	ZNF384	chr11:108095664-108096368	GM12878	blood:	n/a	n/a
20	TCF12	chr11:108096039-108096367	GM12878	blood:	n/a	n/a
21	ATF2	chr11:108095702-108096635	GM12878	blood:	n/a	n/a
22	MAFK	chr11:108096041-108096345	HepG2	liver:	n/a	n/a
23	NFIC	chr11:108092529-108096479	GM12878	blood:	n/a	n/a
24	PAX5	chr11:108095953-108096548	GM12878	blood:	n/a	n/a
25	BATF	chr11:108095978-108096398	GM12878	blood:	n/a	n/a
26	NFATC1	chr11:108095629-108096525	GM12878	blood:	n/a	n/a
27	RUNX3	chr11:108095750-108096487	GM12878	blood:	n/a	n/a
28	POLR2A	chr11:108096044-108096506	GM12892	blood:	n/a	n/a
29	MEF2A	chr11:108095887-108096502	GM12878	blood:	n/a	n/a
30	TBP	chr11:108095717-108096495	GM12878	blood:	n/a	n/a
31	ATF2	chr11:108095695-108096507	GM12878	blood:	n/a	n/a
32	EBF1	chr11:108095986-108096263	GM12878	blood:	n/a	n/a
33	SPI1	chr11:108095994-108096329	GM12891	blood:	n/a	chr11:108096079-108096092 chr11:108096081-108096090 chr11:108096078-108096091
34	SPI1	chr11:108095908-108096406	HL-60	blood:	n/a	chr11:108096079-108096092 chr11:108096081-108096090 chr11:108096078-108096091
35	POLR2A	chr11:108096096-108096272	GM12891	blood:	n/a	n/a
36	POLR2A	chr11:108095980-108096366	GM12891	blood:	n/a	n/a
37	TBL1XR1	chr11:108095894-108096371	GM12878	blood:	n/a	n/a
38	RFX5	chr11:108095644-108096153	GM12878	blood:	n/a	n/a
39	STAT5A	chr11:108095632-108096441	GM12878	blood:	n/a	chr11:108095808-108095816 chr11:108095802-108095822 chr11:108095807-108095816 chr11:108095802-108095822 chr11:108095761-108095768 chr11:108095808-108095817 chr11:108095907-108095918
40	SPI1	chr11:108095967-108096260	GM12878	blood:	n/a	chr11:108096079-108096092 chr11:108096081-108096090 chr11:108096078-108096091
41	PAX5	chr11:108096062-108096319	GM12891	blood:	n/a	n/a
42	STAT3	chr11:108096004-108096286	GM12878	blood:	n/a	n/a
43	NFIC	chr11:108095632-108096514	GM12878	blood:	n/a	n/a
44	PAX5	chr11:108096039-108096475	GM12878	blood:	n/a	n/a
45	MAFF	chr11:108096026-108096356	K562	blood:	n/a	n/a
46	NFATC1	chr11:108095516-108096701	GM12878	blood:	n/a	n/a
47	PML	chr11:108095607-108096460	GM12878	blood:	n/a	n/a
48	MAX	chr11:108096130-108096344	GM12878	blood:	n/a	n/a
49	RUNX3	chr11:108095629-108096505	GM12878	blood:	n/a	n/a
50	ELK1	chr11:108095924-108096143	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:108095113..108096885-chr11:108527340..108529884,2	K562	blood:
2	chr11:108089780..108091711-chr11:108095775..108097725,2	MCF-7	breast:
3	chr11:108070782..108073415-chr11:108095744..108098057,2	MCF-7	breast:

Variant related genes	Relation type
NPAT	TF binding region

Extended variants
information (count: 169 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1003623	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1003624	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10431061	0.88[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs10789656	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10789659	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10890821	0.84[EUR][1000 genomes]
rs10890834	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs11212538	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11212542	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11212543	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11212546	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11212551	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212579	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11212610	0.84[AMR][1000 genomes]
rs11212617	1.00[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs113995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs1150203	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11605442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12272183	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575358	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12787445	0.92[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs1607476	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs170548	0.82[JPT][hapmap]
rs172894	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.91[TSI][hapmap]
rs172895	0.84[AMR][1000 genomes]
rs172896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs172927	0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs179109	0.81[AMR][1000 genomes]
rs179110	0.82[JPT][hapmap]
rs183459	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs183460	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1850730	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs186591	0.81[AMR][1000 genomes]
rs186593	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs186594	0.82[AMR][1000 genomes]
rs186595	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs189037	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1893812	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1893813	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1973723	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2056267	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2070661	0.92[CEU][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs2083707	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs227040	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227041	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs227053	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs227055	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs227058	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs227060	0.82[JPT][hapmap]
rs227061	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs227062	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227063	0.86[AMR][1000 genomes]
rs227064	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs227068	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs227069	0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap]
rs227070	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs227072	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs227074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227075	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs227076	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs227077	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs227086	0.87[AMR][1000 genomes]
rs227087	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs227088	0.88[AMR][1000 genomes]
rs227091	0.87[AMR][1000 genomes]
rs227092	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes]
rs227093	0.88[AMR][1000 genomes]
rs227094	0.84[AMR][1000 genomes]
rs228588	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs228589	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs228591	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs228592	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs228594	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228595	0.82[ASN][1000 genomes]
rs228596	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs228597	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs228598	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs228599	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228601	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs228606	0.90[CHB][hapmap];0.80[MEX][hapmap]
rs228607	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228608	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356801	1.00[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap]
rs373759	0.82[JPT][hapmap]
rs374443	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3781868	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3781869	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4027718	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs419716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs425061	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs425538	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap]
rs4585	1.00[ASW][hapmap];0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs4623864	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4753833	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4754299	0.86[EUR][1000 genomes]
rs4754301	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754305	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754306	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754318	0.82[AMR][1000 genomes]
rs4987982	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs573890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs582157	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs583725	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs592955	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs594153	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs595747	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs597788	0.82[JPT][hapmap]
rs599164	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs599406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs599558	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs600329	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs600691	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs600931	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs601111	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs606275	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs608086	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs609261	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs609429	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs609557	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs609655	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs611646	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs618499	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs61915104	0.86[AMR][1000 genomes]
rs619972	1.00[CEU][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs620613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs621947	0.86[EUR][1000 genomes]
rs623860	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs624366	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs624852	0.84[ASN][1000 genomes]
rs624888	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs625120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs627418	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs634268	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs637064	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs641312	0.90[EUR][1000 genomes]
rs641605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs642496	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs645485	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs647681	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs650128	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs650173	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs652311	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs652541	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs654005	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6589007	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6589008	0.90[EUR][1000 genomes]
rs660429	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs661467	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs662218	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs662578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs664143	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs664677	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs664982	0.88[AMR][1000 genomes]
rs672655	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs672964	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs673281	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs676729	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs679782	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs682131	0.85[AMR][1000 genomes]
rs694376	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs694799	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118967	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7395528	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7931930	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs7932972	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7948117	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9667658	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs228590	ATM	cis	cerebellum	SCAN
rs228590	C11orf53	cis	parietal	SCAN
rs228590	ACAT1	cis	cerebellum	SCAN
rs228590	ACAT1	cis	parietal	SCAN
rs228590	ACAT1	Cis_1M	lymphoblastoid	RTeQTL
rs228590	NPAT	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108091000-108097400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:108091200-108096200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:108091800-108096200	Active TSS	Primary T cells fromperipheralblood	blood
4	chr11:108091800-108096200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:108091800-108097000	Active TSS	Primary T helper naive cells from peripheral blood	blood
6	chr11:108091800-108097000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr11:108091800-108098200	Active TSS	Primary T killer memory cells from peripheral blood	blood
8	chr11:108092200-108097800	Active TSS	Thymus	Thymus
9	chr11:108092400-108096800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:108093800-108096600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:108094000-108098200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr11:108094200-108096600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr11:108094200-108097600	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr11:108094200-108099000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr11:108094400-108096600	Flanking Active TSS	K562	blood
16	chr11:108094400-108096600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr11:108094600-108096200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:108094600-108096200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr11:108094600-108096400	Weak transcription	Small Intestine	intestine
20	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:108094800-108096200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:108094800-108096200	Weak transcription	Lung	lung
23	chr11:108094800-108096200	Flanking Active TSS	Dnd41	blood
24	chr11:108094800-108097200	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr11:108094800-108100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:108094800-108100400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
29	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:108095000-108096200	Weak transcription	Stomach Mucosa	stomach
31	chr11:108095000-108096400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:108095000-108100400	Weak transcription	Ovary	ovary
33	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
34	chr11:108095200-108096200	Active TSS	Fetal Thymus	thymus
35	chr11:108095200-108096200	Weak transcription	Left Ventricle	heart
36	chr11:108095200-108096200	Weak transcription	Pancreas	Pancrea
37	chr11:108095200-108096200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:108095200-108096400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:108095200-108096400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:108095200-108096400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:108095200-108096600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:108095200-108097000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:108095200-108099000	Weak transcription	Fetal Intestine Large	intestine
44	chr11:108095200-108099000	Weak transcription	Placenta	Placenta
45	chr11:108095200-108100400	Weak transcription	Gastric	stomach
46	chr11:108095200-108106800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:108095400-108096200	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr11:108095400-108096200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:108095400-108096200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:108095400-108096200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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