Variant report

Variant	rs11212551
Chromosome Location	chr11:108078693-108078694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108078114..108080431-chr11:108091811..108093952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs1003623	0.83[EUR][1000 genomes]
rs1003624	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs10789656	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789659	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10890821	0.84[EUR][1000 genomes]
rs10890822	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11212525	0.86[JPT][hapmap]
rs11212538	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212542	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11212543	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11212546	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11212579	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs113995	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs1150203	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11605442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12272183	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12575358	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12787445	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1519073	0.82[JPT][hapmap]
rs1550609	0.82[JPT][hapmap]
rs1607476	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs172894	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs172896	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs172927	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs183459	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs183460	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1850730	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs186593	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs186595	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs189037	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1893812	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1893813	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1973723	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2056267	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2070661	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2083707	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227040	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs227041	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs227053	0.96[CEU][hapmap];0.81[AMR][1000 genomes]
rs227055	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs227058	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs227061	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs227062	0.89[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs227063	0.85[AMR][1000 genomes]
rs227064	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs227068	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs227069	0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs227070	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs227072	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs227073	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs227074	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs227075	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs227076	0.81[AMR][1000 genomes]
rs227077	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs227087	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs227092	0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227094	0.83[AMR][1000 genomes]
rs228588	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs228589	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs228590	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228591	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs228592	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs228594	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228596	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs228597	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228598	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228599	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228601	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs228606	0.95[CHB][hapmap]
rs228607	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228608	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs374443	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3781868	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781869	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4027718	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs419716	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs425061	0.81[AMR][1000 genomes]
rs425538	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap]
rs4585	0.88[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs4623864	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753833	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754299	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754301	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754305	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754306	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4987982	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs573890	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes]
rs583725	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs592955	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs594153	0.81[EUR][1000 genomes]
rs595747	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs599164	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs599406	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs599558	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs600329	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs600691	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs600931	0.89[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs601111	0.83[EUR][1000 genomes]
rs608086	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs609261	0.89[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs609429	0.83[AMR][1000 genomes]
rs609557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs609655	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs611646	0.91[CHB][hapmap]
rs618499	0.96[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs619972	0.96[CEU][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs620613	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs621947	0.81[EUR][1000 genomes]
rs623860	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs624366	0.89[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs624888	0.84[AMR][1000 genomes]
rs625120	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs627418	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs637064	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs641312	0.84[EUR][1000 genomes]
rs641605	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs642496	0.85[EUR][1000 genomes]
rs645485	0.89[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs647681	0.81[EUR][1000 genomes]
rs650128	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs650173	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs652311	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs652541	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs654005	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6589004	0.85[ASN][1000 genomes]
rs6589007	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6589008	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs660429	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs661467	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs662218	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs662578	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs664143	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs664677	0.96[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs664982	0.83[AMR][1000 genomes]
rs672655	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs672964	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs673281	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs676729	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs679782	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs694376	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs694799	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118967	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7395528	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931681	0.86[JPT][hapmap]
rs7931930	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs7932972	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7948117	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9667658	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11212551	ACAT1	Cis_1M	lymphoblastoid	RTeQTL
rs11212551	C11orf53	cis	parietal	SCAN
rs11212551	NPAT	cis	cerebellum	SCAN
rs11212551	ATM	cis	cerebellum	SCAN
rs11212551	ACAT1	cis	cerebellum	SCAN
rs11212551	ACAT1	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
4	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:108072800-108081800	ZNF genes & repeats	GM12878-XiMat	blood
6	chr11:108073400-108080200	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr11:108073600-108079200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
8	chr11:108073800-108079200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:108074000-108079000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:108074000-108079200	ZNF genes & repeats	Fetal Brain Female	brain
11	chr11:108074000-108079400	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr11:108074000-108082600	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr11:108074000-108083000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr11:108074200-108081000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:108074200-108082600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:108074400-108079600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr11:108074400-108082400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:108074400-108082600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:108074400-108090800	Weak transcription	Small Intestine	intestine
20	chr11:108074600-108078800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:108074600-108078800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
22	chr11:108074600-108079200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:108074600-108079200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:108074600-108079200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr11:108074600-108079400	ZNF genes & repeats	Thymus	Thymus
26	chr11:108074600-108080000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:108074600-108082800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
28	chr11:108074600-108084000	ZNF genes & repeats	Fetal Stomach	stomach
29	chr11:108074600-108084800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:108074800-108078800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
31	chr11:108074800-108079000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr11:108074800-108079200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:108074800-108079200	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr11:108074800-108079400	ZNF genes & repeats	Fetal Intestine Large	intestine
35	chr11:108074800-108079800	ZNF genes & repeats	Fetal Thymus	thymus
36	chr11:108074800-108080800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:108074800-108082400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:108074800-108082600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr11:108075000-108079000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:108075000-108079200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:108075000-108081800	ZNF genes & repeats	Dnd41	blood
42	chr11:108075000-108083600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:108075400-108079200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:108075400-108082600	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr11:108075800-108082400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:108076400-108079200	ZNF genes & repeats	Fetal Kidney	kidney
47	chr11:108076400-108079200	Strong transcription	Rectal Smooth Muscle	rectum
48	chr11:108076600-108078800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:108076600-108079600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr11:108076800-108078800	Strong transcription	Adipose Nuclei	Adipose

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