Variant report

Variant	rs609557
Chromosome Location	chr11:108084513-108084514
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 170 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1003623	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1003624	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789656	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10789659	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10890821	0.86[EUR][1000 genomes]
rs10890822	0.81[ASN][1000 genomes]
rs11212525	0.86[JPT][hapmap]
rs11212538	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212542	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11212543	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212546	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11212551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212579	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11212610	0.83[AMR][1000 genomes]
rs11212617	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs113995	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs1150203	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11605442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12272183	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12575358	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12787445	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1519073	0.82[JPT][hapmap]
rs1550609	0.82[JPT][hapmap]
rs1607476	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs172894	0.96[CEU][hapmap];0.91[CHB][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs172895	0.83[AMR][1000 genomes]
rs172896	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs172927	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs179109	0.84[AMR][1000 genomes]
rs183459	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183460	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1850730	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs186592	0.81[AMR][1000 genomes]
rs186593	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs186594	0.85[AMR][1000 genomes]
rs186595	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs189037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1893812	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1893813	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1973723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056267	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2070661	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2083707	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227040	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs227041	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227053	0.96[CEU][hapmap];0.90[AMR][1000 genomes]
rs227055	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs227058	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs227061	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227062	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.80[LWK][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs227063	0.90[AMR][1000 genomes]
rs227064	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes]
rs227066	0.81[AMR][1000 genomes]
rs227068	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs227069	0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap]
rs227070	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes]
rs227072	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs227073	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227074	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs227075	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes]
rs227076	0.90[AMR][1000 genomes]
rs227077	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227085	0.81[AMR][1000 genomes]
rs227086	0.86[AMR][1000 genomes]
rs227087	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs227088	0.87[AMR][1000 genomes]
rs227091	0.86[AMR][1000 genomes]
rs227092	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs227093	0.87[AMR][1000 genomes]
rs227094	0.87[AMR][1000 genomes]
rs228588	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228589	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs228590	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228591	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs228592	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228594	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228596	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228597	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228598	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228599	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228601	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs228606	0.95[CHB][hapmap];0.80[MEX][hapmap];0.82[ASN][1000 genomes]
rs228607	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs228608	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356801	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs374443	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs3781868	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781869	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4027718	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs419716	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs425061	0.90[AMR][1000 genomes]
rs425538	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs4585	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs4623864	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4753833	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4754299	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754301	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754305	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754306	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754318	0.81[AMR][1000 genomes]
rs4987982	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs573890	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs582157	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs583725	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs592955	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs594153	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs595747	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes]
rs599164	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs599406	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs599558	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs600329	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs600691	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs600931	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs601111	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606275	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60683001	0.83[AMR][1000 genomes]
rs608086	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs609261	0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs609429	0.92[AMR][1000 genomes]
rs609655	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs611646	0.91[CHB][hapmap]
rs618499	0.96[CEU][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs61915104	0.85[AMR][1000 genomes]
rs619972	0.96[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs620613	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs621947	0.84[EUR][1000 genomes]
rs623860	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624366	0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs624888	0.84[AMR][1000 genomes]
rs625120	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs627418	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs634268	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs637064	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs641312	0.88[EUR][1000 genomes]
rs641605	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs642496	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs645485	0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs647681	0.84[EUR][1000 genomes]
rs650128	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs650173	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs652311	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs652541	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes]
rs654005	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6589004	0.81[ASN][1000 genomes]
rs6589007	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6589008	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs660429	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs661467	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs662218	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs662578	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes]
rs664143	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes]
rs664677	0.96[CEU][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs664982	0.92[AMR][1000 genomes]
rs672655	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs672964	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs673281	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs676729	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs679782	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs694376	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs694799	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7112136	0.81[AMR][1000 genomes]
rs7118967	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7395528	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7931681	0.86[JPT][hapmap]
rs7931930	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs7932972	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948117	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9667658	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs609557	ACAT1	cis	parietal	SCAN
rs609557	ACAT1	cis	cerebellum	SCAN
rs609557	NPAT	cis	cerebellum	SCAN
rs609557	C11orf53	cis	parietal	SCAN
rs609557	ACAT1	cis	multi-tissue	Pritchard
rs609557	ATM	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:108070600-108089800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
4	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:108074400-108090800	Weak transcription	Small Intestine	intestine
6	chr11:108074600-108084800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:108077800-108089200	Weak transcription	HMEC	breast
8	chr11:108078000-108085200	Strong transcription	Fetal Lung	lung
9	chr11:108078000-108090400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:108078000-108090600	Weak transcription	Fetal Heart	heart
11	chr11:108078200-108089000	Weak transcription	Osteobl	bone
12	chr11:108078200-108089400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:108078200-108089400	Weak transcription	NHDF-Ad	bronchial
14	chr11:108078400-108085000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:108078400-108091800	Weak transcription	HSMMtube	muscle
16	chr11:108078600-108085200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:108078600-108086600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:108078600-108089800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:108078600-108089800	Weak transcription	Pancreas	Pancrea
20	chr11:108078600-108090600	Weak transcription	Aorta	Aorta
21	chr11:108078600-108090800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:108078600-108090800	Weak transcription	Brain Substantia Nigra	brain
23	chr11:108078600-108091600	Weak transcription	Right Ventricle	heart
24	chr11:108078600-108091800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:108078600-108091800	Weak transcription	Lung	lung
26	chr11:108078600-108092200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:108078600-108092200	Weak transcription	Esophagus	oesophagus
28	chr11:108078800-108085000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:108078800-108085000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:108078800-108089800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:108078800-108091400	Weak transcription	Adipose Nuclei	Adipose
32	chr11:108078800-108092200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:108079000-108089200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:108079000-108089800	Weak transcription	Hela-S3	cervix
35	chr11:108079000-108090800	Weak transcription	Brain Anterior Caudate	brain
36	chr11:108079000-108091000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:108079200-108085200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:108079200-108087600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:108079200-108087600	Weak transcription	NHEK	skin
40	chr11:108079200-108087800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:108079200-108087800	Weak transcription	Spleen	Spleen
42	chr11:108079200-108089400	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:108079200-108089800	Weak transcription	Gastric	stomach
44	chr11:108079200-108090400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:108079200-108090600	Weak transcription	NHLF	lung
46	chr11:108079200-108091400	Weak transcription	NH-A	brain
47	chr11:108079200-108091800	Weak transcription	Brain Angular Gyrus	brain
48	chr11:108079200-108091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:108079600-108090000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:108079600-108091800	Weak transcription	Colonic Mucosa	Colon

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