Variant report

Variant	rs6589007
Chromosome Location	chr11:108040104-108040105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs1003623	0.84[EUR][1000 genomes]
rs1003624	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs10789656	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10890821	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10890822	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11212525	0.86[JPT][hapmap]
rs11212527	0.82[EUR][1000 genomes]
rs11212538	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212542	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11212543	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212546	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11212551	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212579	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1150203	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11605442	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12272183	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12575358	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12787445	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519073	0.82[JPT][hapmap]
rs1550609	0.82[JPT][hapmap]
rs1607476	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs172896	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs172927	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs183459	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs183460	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1850730	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186595	0.81[AMR][1000 genomes]
rs189037	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1893812	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1893813	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1973723	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2056267	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2070661	0.96[CEU][hapmap];0.81[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083707	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs227040	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs227041	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs227053	0.96[CEU][hapmap];0.81[AMR][1000 genomes]
rs227061	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs227062	0.89[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs227063	0.83[AMR][1000 genomes]
rs227064	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs227068	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs227069	0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs227070	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs227072	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs227073	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs227074	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs227075	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs227076	0.81[AMR][1000 genomes]
rs227077	0.81[AMR][1000 genomes]
rs227092	0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs227094	0.81[AMR][1000 genomes]
rs228588	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs228589	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs228590	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228591	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs228592	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs228594	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs228596	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs228597	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228598	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228599	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs228601	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs228606	0.95[CHB][hapmap]
rs228607	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs228608	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs374443	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3781868	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781869	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4027718	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs419716	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs425061	0.81[AMR][1000 genomes]
rs425538	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap]
rs4585	0.88[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs4623864	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753833	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4754299	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4754301	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754305	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754306	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4987982	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs573890	0.81[AMR][1000 genomes]
rs582157	0.81[EUR][1000 genomes]
rs583725	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs592955	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs594153	0.82[EUR][1000 genomes]
rs595747	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs599164	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs599406	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs599558	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs600329	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs600691	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs600931	0.89[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs601111	0.84[EUR][1000 genomes]
rs606275	0.81[EUR][1000 genomes]
rs608086	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs609261	0.89[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs609429	0.83[AMR][1000 genomes]
rs609557	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609655	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs611646	0.91[CHB][hapmap]
rs618499	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs619972	0.96[CEU][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs620613	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs621947	0.82[EUR][1000 genomes]
rs623860	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs624366	0.89[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs624888	0.84[AMR][1000 genomes]
rs625120	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs627418	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs634268	0.81[EUR][1000 genomes]
rs637064	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs641312	0.86[EUR][1000 genomes]
rs641605	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs642496	0.86[EUR][1000 genomes]
rs645485	0.89[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs647681	0.82[EUR][1000 genomes]
rs650128	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs650173	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs652311	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs652541	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs654005	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6589004	0.87[ASN][1000 genomes]
rs6589008	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs660429	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs661467	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs662218	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs662578	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs664143	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs664677	0.96[CEU][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs664982	0.83[AMR][1000 genomes]
rs672655	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs672964	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs673281	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs676729	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs679782	0.87[EUR][1000 genomes]
rs694376	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs694799	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7118967	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7129527	0.82[ASN][1000 genomes]
rs7395528	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7931681	0.86[JPT][hapmap]
rs7932972	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7948117	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6589007	ATM	cis	cerebellum	SCAN
rs6589007	ACAT1	cis	cerebellum	SCAN
rs6589007	C11orf53	cis	parietal	SCAN
rs6589007	NPAT	cis	cerebellum	SCAN
rs6589007	ACAT1	cis	multi-tissue	Pritchard
rs6589007	AVIL	trans	parietal	SCAN
rs6589007	ACAT1	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108002200-108069600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108002400-108040200	Strong transcription	Liver	Liver
4	chr11:108002800-108048000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:108003600-108040800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:108005800-108040800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr11:108009000-108041000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:108009400-108040400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:108009400-108062600	Strong transcription	Primary T cells from cord blood	blood
11	chr11:108009400-108068400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:108009600-108041800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:108009600-108049000	Strong transcription	Placenta	Placenta
14	chr11:108009600-108068200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:108009800-108048000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:108010800-108041400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:108010800-108041800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:108010800-108049200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:108011600-108044200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:108011800-108047800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:108015600-108045000	Weak transcription	Stomach Mucosa	stomach
23	chr11:108017000-108075000	Strong transcription	Dnd41	blood
24	chr11:108018200-108040600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:108019000-108043800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:108022800-108043000	Weak transcription	Colonic Mucosa	Colon
27	chr11:108022800-108052600	Weak transcription	Spleen	Spleen
28	chr11:108023000-108053000	Weak transcription	Pancreas	Pancrea
29	chr11:108023000-108055400	Weak transcription	Esophagus	oesophagus
30	chr11:108023800-108041000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:108023800-108053200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:108024600-108047600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:108024800-108070400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:108025600-108041600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:108025800-108041000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
37	chr11:108026600-108040800	Weak transcription	NHLF	lung
38	chr11:108026600-108047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:108026800-108071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:108027000-108069800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr11:108028000-108041000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:108028800-108041800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:108028800-108068000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:108029200-108067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:108029400-108041800	Strong transcription	Brain Germinal Matrix	brain
46	chr11:108029600-108040800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr11:108029600-108043400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:108030000-108041400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:108030000-108048800	Strong transcription	Fetal Intestine Large	intestine
50	chr11:108030200-108040400	Strong transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links