Variant report

Variant	rs183460
Chromosome Location	chr11:108090710-108090711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:108090058..108092133-chr11:108101877..108104641,2	K562	blood:
2	chr11:108089780..108091711-chr11:108095775..108097725,2	MCF-7	breast:
3	chr11:108062624..108065338-chr11:108088308..108091016,2	K562	blood:
4	chr11:108090010..108092398-chr11:108154692..108157090,2	K562	blood:
5	chr11:108089572..108092261-chr11:108170855..108173467,2	K562	blood:
6	chr11:107991146..107993770-chr11:108087993..108092186,3	K562	blood:
7	chr11:108069760..108073247-chr11:108087565..108091000,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000075239	Chromatin interaction
ENSG00000255467	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs1003623	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1003624	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10431060	0.81[AMR][1000 genomes]
rs10431061	0.88[ASW][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs10789656	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10789659	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10890821	0.86[EUR][1000 genomes]
rs10890822	0.81[ASN][1000 genomes]
rs10890834	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs11212525	0.86[JPT][hapmap]
rs11212538	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212542	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11212543	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212546	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212551	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212579	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11212610	0.85[AMR][1000 genomes]
rs11212617	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11212619	0.81[AMR][1000 genomes]
rs113995	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs1150203	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11605442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12272183	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12575358	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12787445	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1519073	0.82[JPT][hapmap]
rs1550609	0.82[JPT][hapmap]
rs1607476	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs172894	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs172895	0.85[AMR][1000 genomes]
rs172896	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs172927	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs179109	0.82[AMR][1000 genomes]
rs183459	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1850730	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs186591	0.82[AMR][1000 genomes]
rs186593	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs186594	0.83[AMR][1000 genomes]
rs186595	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs189037	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1893812	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1893813	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1973723	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056267	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2070661	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2083707	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227040	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227041	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs227053	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs227055	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs227058	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs227061	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs227062	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227063	0.87[AMR][1000 genomes]
rs227064	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes]
rs227068	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs227069	0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap]
rs227070	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs227072	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227073	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs227074	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes]
rs227075	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs227076	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs227077	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs227086	0.88[AMR][1000 genomes]
rs227087	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs227088	0.90[AMR][1000 genomes]
rs227091	0.88[AMR][1000 genomes]
rs227092	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes]
rs227093	0.90[AMR][1000 genomes]
rs227094	0.85[AMR][1000 genomes]
rs228588	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs228589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs228590	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs228591	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs228592	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228594	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228596	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs228597	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs228598	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs228599	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs228601	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs228606	0.95[CHB][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs228607	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs228608	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2356801	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap]
rs374443	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3781868	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781869	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4027718	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs419716	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs425061	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs425538	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap]
rs4585	1.00[ASW][hapmap];0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs4623864	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4753833	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754299	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754301	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4754305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754306	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754318	0.83[AMR][1000 genomes]
rs4987982	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs573890	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs582157	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs583725	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs592955	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs594153	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs595747	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs599164	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs599406	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs599558	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs600329	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs600691	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs600931	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs601111	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606275	0.83[EUR][1000 genomes]
rs60683001	0.81[AMR][1000 genomes]
rs608086	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs609261	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs609429	0.90[AMR][1000 genomes]
rs609557	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs609655	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs611646	0.91[CHB][hapmap]
rs618499	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs61915104	0.87[AMR][1000 genomes]
rs619972	1.00[CEU][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs620613	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs621947	0.84[EUR][1000 genomes]
rs623860	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs624366	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs624888	0.86[AMR][1000 genomes]
rs625120	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs627418	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs634268	0.83[EUR][1000 genomes]
rs637064	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs641312	0.88[EUR][1000 genomes]
rs641605	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs642496	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs645485	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs647681	0.84[EUR][1000 genomes]
rs650128	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs650173	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs652311	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs652541	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs654005	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6589004	0.81[ASN][1000 genomes]
rs6589007	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6589008	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs660429	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs661467	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs662218	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs662578	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes]
rs664143	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs664677	1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs664982	0.90[AMR][1000 genomes]
rs672655	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs672964	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs673281	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs676729	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs679782	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs682131	0.82[AMR][1000 genomes]
rs694376	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs694799	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118967	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7395528	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7931681	0.86[JPT][hapmap]
rs7931930	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs7932972	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7948117	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9667658	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs183460	ACAT1	cis	cerebellum	SCAN
rs183460	NPAT	cis	cerebellum	SCAN
rs183460	ACAT1	cis	multi-tissue	Pritchard
rs183460	C11orf53	cis	parietal	SCAN
rs183460	ATM	cis	cerebellum	SCAN
rs183460	ACAT1	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:108071000-108091600	Weak transcription	Right Atrium	heart
3	chr11:108071400-108092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:108074400-108090800	Weak transcription	Small Intestine	intestine
5	chr11:108078400-108091800	Weak transcription	HSMMtube	muscle
6	chr11:108078600-108090800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:108078600-108090800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:108078600-108091600	Weak transcription	Right Ventricle	heart
9	chr11:108078600-108091800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:108078600-108091800	Weak transcription	Lung	lung
11	chr11:108078600-108092200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:108078600-108092200	Weak transcription	Esophagus	oesophagus
13	chr11:108078800-108091400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:108078800-108092200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:108079000-108090800	Weak transcription	Brain Anterior Caudate	brain
16	chr11:108079000-108091000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:108079200-108091400	Weak transcription	NH-A	brain
18	chr11:108079200-108091800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:108079200-108091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:108079600-108091800	Weak transcription	Colonic Mucosa	Colon
21	chr11:108081400-108091800	Weak transcription	HSMM	muscle
22	chr11:108081600-108091400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:108081600-108091600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:108081800-108091000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:108081800-108091600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:108081800-108091600	Weak transcription	A549	lung
27	chr11:108081800-108092200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:108082000-108091600	Weak transcription	Placenta	Placenta
29	chr11:108082200-108091800	Weak transcription	Ovary	ovary
30	chr11:108082800-108091600	Weak transcription	Fetal Kidney	kidney
31	chr11:108083600-108090800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:108083800-108091000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:108084000-108090800	Weak transcription	Thymus	Thymus
34	chr11:108084000-108091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:108084000-108092600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:108084600-108091600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:108084800-108090800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:108084800-108091400	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr11:108085000-108090800	Weak transcription	Fetal Intestine Small	intestine
40	chr11:108085000-108091400	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:108085000-108091400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:108085000-108091600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:108085000-108091800	Weak transcription	Fetal Stomach	stomach
44	chr11:108085200-108091200	Weak transcription	Fetal Lung	lung
45	chr11:108085200-108091800	Weak transcription	Left Ventricle	heart
46	chr11:108085200-108091800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:108085400-108090800	Weak transcription	Fetal Thymus	thymus
48	chr11:108085400-108091200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:108087000-108091400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr11:108088000-108091800	Weak transcription	Liver	Liver

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