Variant report

Variant	rs2028155
Chromosome Location	chr11:108267430-108267431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108266493..108268409-chr11:108272431..108274588,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10431060	0.80[ASN][1000 genomes]
rs10431061	0.82[ASN][1000 genomes]
rs10789659	0.85[ASN][1000 genomes]
rs11212610	0.80[ASN][1000 genomes]
rs11212635	0.81[ASN][1000 genomes]
rs113995	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1583598	0.81[ASN][1000 genomes]
rs170547	0.81[ASN][1000 genomes]
rs172895	0.89[ASN][1000 genomes]
rs179109	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs186592	0.84[ASN][1000 genomes]
rs186594	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs186595	0.87[ASN][1000 genomes]
rs227040	0.82[ASN][1000 genomes]
rs227041	0.82[ASN][1000 genomes]
rs227054	0.84[ASN][1000 genomes]
rs227061	0.82[ASN][1000 genomes]
rs227062	0.82[ASN][1000 genomes]
rs227063	0.81[ASN][1000 genomes]
rs227068	0.82[ASN][1000 genomes]
rs227072	0.82[ASN][1000 genomes]
rs227073	0.82[ASN][1000 genomes]
rs227074	0.82[ASN][1000 genomes]
rs227076	0.82[ASN][1000 genomes]
rs227077	0.88[ASN][1000 genomes]
rs227085	0.86[ASN][1000 genomes]
rs227086	0.85[ASN][1000 genomes]
rs227087	0.84[ASN][1000 genomes]
rs227088	0.85[ASN][1000 genomes]
rs227091	0.84[ASN][1000 genomes]
rs227092	0.85[ASN][1000 genomes]
rs227094	0.85[ASN][1000 genomes]
rs419716	0.82[ASN][1000 genomes]
rs425061	0.82[ASN][1000 genomes]
rs4585	0.85[ASN][1000 genomes]
rs4754318	0.86[ASN][1000 genomes]
rs573890	0.87[ASN][1000 genomes]
rs605394	0.81[ASN][1000 genomes]
rs60683001	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61915104	0.86[ASN][1000 genomes]
rs652311	0.85[ASN][1000 genomes]
rs664982	0.82[ASN][1000 genomes]
rs7112136	0.86[ASN][1000 genomes]
rs7120845	0.81[ASN][1000 genomes]
rs7931930	0.80[ASN][1000 genomes]
rs9667658	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv16145	chr11:108256476-108267672	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2028155	ACAT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108265800-108271600	Weak transcription	Gastric	stomach
2	chr11:108266000-108271200	Weak transcription	K562	blood

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