Variant report

Variant	rs170547
Chromosome Location	chr11:108244615-108244616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10431060	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10431061	0.84[ASN][1000 genomes]
rs10789659	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212610	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212619	0.88[EUR][1000 genomes]
rs11212635	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11212640	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11212659	0.82[EUR][1000 genomes]
rs113995	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12792979	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12796446	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583598	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs172895	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs179109	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs183459	0.81[AMR][1000 genomes]
rs184472	0.87[ASN][1000 genomes]
rs186591	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs186592	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs186594	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs186595	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs190131	0.82[ASN][1000 genomes]
rs2028155	0.81[ASN][1000 genomes]
rs2118308	0.82[ASN][1000 genomes]
rs227040	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227041	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227053	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227054	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227061	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227062	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227063	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227064	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227066	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227067	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227068	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227070	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227072	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227073	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227074	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227075	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227076	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227077	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs227085	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227086	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227087	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227088	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227091	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227092	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227093	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227094	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs228607	0.80[AMR][1000 genomes]
rs35352778	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs365288	0.81[ASN][1000 genomes]
rs374443	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3765632	0.83[EUR][1000 genomes]
rs3901851	0.82[EUR][1000 genomes]
rs396552	0.81[EUR][1000 genomes]
rs419716	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs425061	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs425538	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4585	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754318	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754322	0.82[ASN][1000 genomes]
rs4754324	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5023001	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs573890	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs595747	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs599558	0.81[ASN][1000 genomes]
rs605394	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs606275	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60639858	0.82[ASN][1000 genomes]
rs60683001	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs608086	0.82[ASN][1000 genomes]
rs609429	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609655	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61913892	0.81[EUR][1000 genomes]
rs61915104	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs620613	0.82[ASN][1000 genomes]
rs621947	0.80[EUR][1000 genomes]
rs634268	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs647681	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs650173	0.82[ASN][1000 genomes]
rs652311	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs652541	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6589018	0.82[ASN][1000 genomes]
rs660429	0.82[ASN][1000 genomes]
rs662218	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs662578	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs664143	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs664982	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs673281	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs694376	0.81[AMR][1000 genomes]
rs7112136	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7120845	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7931930	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942014	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943607	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9667658	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs170547	ACAT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108226600-108257400	Weak transcription	Right Ventricle	heart
2	chr11:108227600-108245600	Weak transcription	Fetal Brain Female	brain
3	chr11:108227800-108245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:108236200-108245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:108236800-108245600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:108237800-108245200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:108237800-108245600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:108239600-108245800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:108239600-108260800	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:108240200-108245400	Weak transcription	Primary T cells from cord blood	blood
11	chr11:108244400-108244800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links