Variant report

Variant	rs11212825
Chromosome Location	chr11:108822999-108823000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466523	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10502106	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789688	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10789691	0.85[ASN][1000 genomes]
rs10789693	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10789694	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789696	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890897	0.81[EUR][1000 genomes]
rs10890898	0.80[EUR][1000 genomes]
rs10890899	0.85[ASN][1000 genomes]
rs10890901	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10890902	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890903	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10890905	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10890908	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10890909	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11212797	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11212802	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212811	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11212816	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1863366	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2357224	0.82[ASN][1000 genomes]
rs4237580	0.81[ASN][1000 genomes]
rs4753852	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4754357	0.81[ASN][1000 genomes]
rs4754358	0.80[EUR][1000 genomes]
rs4754359	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4754366	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61912810	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs890237	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108805200-108829600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108810200-108829000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:108812000-108823400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:108812200-108828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:108819400-108828400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:108819400-108828400	Weak transcription	A549	lung
7	chr11:108819400-108828400	Weak transcription	NHEK	skin

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