Variant report

Variant	rs10890905
Chromosome Location	chr11:108792103-108792104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108791917..108793676-chr11:108795093..108797181,2	K562	blood:
2	chr11:108791030..108793676-chr11:108795093..108797855,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10466523	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10502106	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10749926	0.81[EUR][1000 genomes]
rs10749927	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs10749928	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs10749929	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10789677	0.81[EUR][1000 genomes]
rs10789678	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10789680	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs10789681	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs10789682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10789683	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs10789685	0.87[EUR][1000 genomes]
rs10789688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10789691	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10789693	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10789694	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10789696	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10890888	0.83[EUR][1000 genomes]
rs10890889	0.85[EUR][1000 genomes]
rs10890893	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs10890894	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs10890895	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10890897	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890898	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890901	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890902	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890903	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890908	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890909	0.81[ASN][1000 genomes]
rs11212771	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11212774	0.83[EUR][1000 genomes]
rs11212797	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11212802	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212811	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212816	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11212825	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11530525	0.83[EUR][1000 genomes]
rs12420572	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs17108567	1.00[YRI][hapmap]
rs1824664	0.82[EUR][1000 genomes]
rs1824665	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1863366	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357224	0.91[ASN][1000 genomes]
rs3781864	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs3781866	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs3781867	0.81[EUR][1000 genomes]
rs3902843	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4027488	0.83[EUR][1000 genomes]
rs4237580	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4497371	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4753849	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4753852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754354	0.83[EUR][1000 genomes]
rs4754357	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4754358	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754359	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4754366	0.92[ASN][1000 genomes]
rs61912810	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7103086	0.83[EUR][1000 genomes]
rs7116062	0.82[EUR][1000 genomes]
rs7940595	0.82[EUR][1000 genomes]
rs890237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv39083	chr11:108786697-108792970	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:108775000-108794400	Weak transcription	Aorta	Aorta
5	chr11:108777200-108797000	Weak transcription	Psoas Muscle	Psoas
6	chr11:108778000-108799600	Weak transcription	HMEC	breast
7	chr11:108778200-108810600	Weak transcription	Ovary	ovary
8	chr11:108780600-108810600	Weak transcription	Pancreas	Pancrea
9	chr11:108781600-108810400	Weak transcription	GM12878-XiMat	blood
10	chr11:108781800-108793200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:108783000-108810600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:108784200-108796600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:108784400-108793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:108784400-108804000	Weak transcription	K562	blood
15	chr11:108785200-108807800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:108786000-108793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:108786400-108810600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:108787000-108810800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:108787200-108799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:108787200-108799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:108787200-108799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:108787200-108815000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:108787400-108795000	Weak transcription	Brain Germinal Matrix	brain
24	chr11:108787400-108810600	Weak transcription	Liver	Liver
25	chr11:108787600-108793200	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:108787600-108795200	Weak transcription	A549	lung
27	chr11:108787600-108799400	Weak transcription	NHEK	skin
28	chr11:108787800-108798000	Weak transcription	Fetal Thymus	thymus
29	chr11:108787800-108798000	Weak transcription	HSMMtube	muscle
30	chr11:108788000-108793200	Weak transcription	NH-A	brain
31	chr11:108788000-108793800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:108788000-108793800	Weak transcription	HUVEC	blood vessel
33	chr11:108788000-108798600	Weak transcription	HSMM	muscle
34	chr11:108788000-108799800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:108788000-108802000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:108788200-108797800	Weak transcription	Osteobl	bone
37	chr11:108788400-108793000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:108788600-108792200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:108788600-108792200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:108788600-108796800	Weak transcription	Fetal Kidney	kidney
41	chr11:108789000-108795200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:108789600-108792200	Strong transcription	Primary B cells from cord blood	blood
43	chr11:108789600-108792200	Strong transcription	Primary T cells from cord blood	blood
44	chr11:108790200-108810600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:108790600-108793000	Weak transcription	Placenta	Placenta
46	chr11:108791200-108793200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:108791200-108810600	Weak transcription	Dnd41	blood
48	chr11:108791400-108792400	Enhancers	Fetal Lung	lung
49	chr11:108791400-108810800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:108791600-108810800	Weak transcription	Primary B cells from peripheral blood	blood

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