Variant report

Variant	rs10789678
Chromosome Location	chr11:108626467-108626468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108617140..108620496-chr11:108622218..108627309,5	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10749923	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10749926	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10749927	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs10749928	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes]
rs10749929	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10789675	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10789676	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10789677	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10789680	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789681	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10789682	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10789683	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10789685	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10789688	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10789693	0.96[CEU][hapmap]
rs10890877	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890879	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs10890883	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890888	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10890889	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890893	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs10890894	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10890895	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10890897	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10890898	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs10890899	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10890901	0.85[EUR][1000 genomes]
rs10890902	0.88[EUR][1000 genomes]
rs10890903	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10890905	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11212750	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11212771	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11212774	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11212797	0.84[EUR][1000 genomes]
rs11212802	0.84[EUR][1000 genomes]
rs11212811	0.86[EUR][1000 genomes]
rs11212816	0.96[CEU][hapmap]
rs11530525	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12276650	1.00[YRI][hapmap]
rs12293543	1.00[YRI][hapmap]
rs12420572	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1824664	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1824665	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1863366	0.87[EUR][1000 genomes]
rs2169562	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2306118	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3781864	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3781866	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3781867	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3902843	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4027488	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4237580	0.92[EUR][1000 genomes]
rs4497371	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4753849	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4753852	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4754354	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754357	0.86[EUR][1000 genomes]
rs4754358	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4754359	0.86[EUR][1000 genomes]
rs61912810	0.83[EUR][1000 genomes]
rs7103086	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7116062	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7940595	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs890237	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:108604800-108627800	Weak transcription	Left Ventricle	heart
3	chr11:108605800-108663800	Weak transcription	K562	blood
4	chr11:108606000-108627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
6	chr11:108607800-108628200	Weak transcription	Liver	Liver
7	chr11:108612200-108627400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:108612600-108626600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:108612800-108630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:108614600-108628200	Weak transcription	Pancreas	Pancrea
11	chr11:108614600-108638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
13	chr11:108617600-108627400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:108622400-108629600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:108623000-108628600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:108625000-108626800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:108625200-108627000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:108625400-108626600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:108625400-108627000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:108625800-108626800	Weak transcription	Fetal Heart	heart
21	chr11:108625800-108627000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:108626000-108628400	Weak transcription	Adipose Nuclei	Adipose
23	chr11:108626000-108628600	Weak transcription	Ovary	ovary
24	chr11:108626000-108628600	Weak transcription	NH-A	brain
25	chr11:108626000-108628800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:108626000-108629600	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:108626000-108632400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:108626000-108635000	Weak transcription	Psoas Muscle	Psoas
29	chr11:108626200-108626600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:108626200-108629400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:108626200-108629800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:108626200-108641600	Weak transcription	HSMM	muscle
33	chr11:108626400-108627800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr11:108626400-108629200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:108626400-108629200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:108626400-108629800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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