Variant report

Variant	rs10890898
Chromosome Location	chr11:108709772-108709773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10466523	0.84[EUR][1000 genomes]
rs10502106	0.84[EUR][1000 genomes]
rs10749923	0.84[EUR][1000 genomes]
rs10749926	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10749927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10749928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10749929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10789675	0.85[EUR][1000 genomes]
rs10789676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789677	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10789678	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs10789680	0.90[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10789681	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789682	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes]
rs10789683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789685	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789688	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10789691	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10789693	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[YRI][hapmap];0.89[EUR][1000 genomes]
rs10789694	0.89[EUR][1000 genomes]
rs10789696	0.80[EUR][1000 genomes]
rs10890877	0.85[EUR][1000 genomes]
rs10890879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs10890883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890888	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890889	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10890893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10890894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890895	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs10890897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890899	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890901	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10890902	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10890903	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890905	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10890908	0.82[EUR][1000 genomes]
rs11212750	0.85[EUR][1000 genomes]
rs11212771	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11212774	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11212797	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212802	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11212811	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212816	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes]
rs11212825	0.80[EUR][1000 genomes]
rs11530525	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12420572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1824664	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1824665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1863366	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2169562	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2357224	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3781864	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781866	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781867	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3902843	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4027488	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4237580	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4497371	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4753849	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4753852	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754354	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754357	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4754359	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61912810	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7103086	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7116062	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7940595	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs890237	1.00[CEU][hapmap];0.87[CHB][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
2	chr11:108687000-108717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108701000-108724400	Weak transcription	NHEK	skin
4	chr11:108702800-108712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:108703000-108712000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:108704000-108709800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:108704400-108723000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:108706600-108711600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:108706600-108724400	Weak transcription	Small Intestine	intestine
10	chr11:108706800-108710200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:108706800-108724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:108707000-108712000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:108707200-108714200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:108707200-108724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:108707400-108712200	Weak transcription	Thymus	Thymus
16	chr11:108707400-108723200	Weak transcription	Psoas Muscle	Psoas
17	chr11:108707600-108740800	Weak transcription	HMEC	breast
18	chr11:108707800-108714000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:108707800-108723200	Weak transcription	Osteobl	bone
20	chr11:108707800-108723400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:108707800-108723800	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:108708000-108724000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:108708000-108724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:108708000-108724400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:108708000-108724600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:108708200-108712400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:108708200-108714000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:108708200-108717000	Weak transcription	NHDF-Ad	bronchial
29	chr11:108708200-108723600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:108708200-108723600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:108708200-108723800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:108708200-108724400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:108708200-108724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:108708200-108724600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:108708200-108729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:108708400-108717600	Weak transcription	Placenta	Placenta
37	chr11:108708400-108724200	Weak transcription	NH-A	brain
38	chr11:108708400-108724400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:108708600-108714600	Weak transcription	HepG2	liver
40	chr11:108708600-108723200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:108708600-108724800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:108709000-108710200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:108709000-108710600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:108709000-108711000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:108709200-108710000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:108709200-108710200	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:108709200-108710200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:108709200-108710200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:108709200-108710200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:108709200-108710200	Strong transcription	Adipose Nuclei	Adipose

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