Variant report

Variant	rs11530525
Chromosome Location	chr11:108616005-108616006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10749923	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10749926	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10749927	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10749928	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10749929	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10789675	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10789676	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10789677	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789678	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10789680	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10789681	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10789682	0.92[EUR][1000 genomes]
rs10789683	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10789685	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10789688	0.84[EUR][1000 genomes]
rs10890877	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890879	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10890883	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890888	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890889	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10890893	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10890894	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10890895	0.90[EUR][1000 genomes]
rs10890897	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890898	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890899	0.83[EUR][1000 genomes]
rs10890901	0.82[EUR][1000 genomes]
rs10890902	0.84[EUR][1000 genomes]
rs10890903	0.84[EUR][1000 genomes]
rs10890905	0.83[EUR][1000 genomes]
rs11212750	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212771	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212774	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212797	0.81[EUR][1000 genomes]
rs11212802	0.83[EUR][1000 genomes]
rs11212811	0.85[EUR][1000 genomes]
rs12420572	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1824664	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1824665	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1863366	0.83[EUR][1000 genomes]
rs2169562	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306118	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781864	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781866	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781867	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3902843	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4027488	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4237580	0.88[EUR][1000 genomes]
rs4497371	0.83[EUR][1000 genomes]
rs4753849	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4753852	0.85[EUR][1000 genomes]
rs4754354	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4754357	0.83[EUR][1000 genomes]
rs4754358	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754359	0.85[EUR][1000 genomes]
rs61912810	0.82[EUR][1000 genomes]
rs7103086	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116062	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940595	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs890237	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:108581800-108616200	Weak transcription	Esophagus	oesophagus
3	chr11:108592000-108620000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:108594400-108625400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:108596400-108621000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr11:108603600-108617600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:108604600-108625600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:108604600-108625800	Weak transcription	Primary T cells from cord blood	blood
9	chr11:108604800-108627800	Weak transcription	Left Ventricle	heart
10	chr11:108605200-108618400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:108605400-108625400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:108605800-108622800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:108605800-108663800	Weak transcription	K562	blood
14	chr11:108606000-108627400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:108607600-108622000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
17	chr11:108607800-108628200	Weak transcription	Liver	Liver
18	chr11:108611000-108625400	Weak transcription	NHLF	lung
19	chr11:108612200-108627400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:108612600-108617000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:108612600-108622400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:108612600-108626600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:108612800-108630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:108614600-108616800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:108614600-108628200	Weak transcription	Pancreas	Pancrea
26	chr11:108614600-108638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
28	chr11:108616000-108616200	Enhancers	Right Atrium	heart
29	chr11:108616000-108616800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links