Variant report

Variant	rs11217786
Chromosome Location	chr11:120152659-120152660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120151774..120154252-chr11:120159688..120162065,3	K562	blood:
2	chr11:120126805..120129444-chr11:120151052..120153033,2	MCF-7	breast:
3	chr11:120152442..120154565-chr11:120163007..120165432,2	K562	blood:
4	chr11:120130830..120132794-chr11:120150514..120152868,2	K562	blood:
5	chr11:120151169..120153171-chr11:120166306..120168232,2	K562	blood:
6	chr11:120149912..120152911-chr11:120168871..120171487,3	K562	blood:
7	chr11:120106294..120109068-chr11:120151729..120153765,2	K562	blood:
8	chr11:120141543..120143317-chr11:120150505..120153667,3	K562	blood:
9	chr11:120105904..120109719-chr11:120147377..120154019,10	K562	blood:
10	chr11:120144746..120147673-chr11:120150334..120152904,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11217797	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217798	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217799	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217800	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217802	0.92[ASN][1000 genomes]
rs11217803	0.92[ASN][1000 genomes]
rs11217804	0.92[ASN][1000 genomes]
rs11217805	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217806	0.92[ASN][1000 genomes]
rs11217807	0.92[ASN][1000 genomes]
rs12224052	0.96[ASN][1000 genomes]
rs12225696	0.92[ASN][1000 genomes]
rs2298579	0.85[ASN][1000 genomes]
rs4142654	0.92[ASN][1000 genomes]
rs744984	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120149200-120152800	Enhancers	Hela-S3	cervix
2	chr11:120150000-120153000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:120150200-120154200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:120150400-120152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:120150400-120153000	Enhancers	Fetal Heart	heart
6	chr11:120151400-120152800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:120151400-120153000	Enhancers	Right Atrium	heart
8	chr11:120151600-120152800	Flanking Active TSS	K562	blood
9	chr11:120151600-120153800	Weak transcription	Esophagus	oesophagus
10	chr11:120152000-120152800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:120152000-120159600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:120152400-120152800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:120152600-120153800	Weak transcription	Lung	lung
14	chr11:120152600-120155000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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