Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
2	chr11:120104352..120110604-chr11:120164438..120175098,43	MCF-7	breast:
3	chr11:120161703..120167886-chr11:120168928..120172296,6	K562	blood:
4	chr11:120105745..120106386-chr11:120166391..120167340,4	K562	blood:
5	chr11:120166386..120168824-chr11:120169274..120170936,2	K562	blood:
6	chr11:120163792..120168404-chr11:120169163..120175266,6	MCF-7	breast:
7	chr11:120105986..120110139-chr11:120162692..120168380,9	K562	blood:
8	chr11:120151169..120153171-chr11:120166306..120168232,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11217786	0.92[ASN][1000 genomes]
rs11217797	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217798	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217799	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217800	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217805	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217806	0.99[ASN][1000 genomes]
rs11217807	0.99[ASN][1000 genomes]
rs11603274	0.81[EUR][1000 genomes]
rs11603307	0.81[EUR][1000 genomes]
rs11603757	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11607289	0.81[EUR][1000 genomes]
rs12224052	0.96[ASN][1000 genomes]
rs17123780	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2298579	0.92[ASN][1000 genomes]
rs3824883	0.83[ASN][1000 genomes]
rs4142654	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616049	0.81[ASN][1000 genomes]
rs4936514	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4938794	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6589804	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs744984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120166200-120168000	Weak transcription	Pancreas	Pancrea
2	chr11:120166400-120167800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:120166600-120167800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:120166600-120170200	Weak transcription	Hela-S3	cervix
5	chr11:120166800-120167800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:120166800-120167800	Weak transcription	NHEK	skin
7	chr11:120166800-120170400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:120167000-120170400	Weak transcription	Fetal Intestine Large	intestine

Quick Search: