Variant report

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
2	chr11:120161703..120167886-chr11:120168928..120172296,6	K562	blood:
3	chr11:120152442..120154565-chr11:120163007..120165432,2	K562	blood:
4	chr11:120155722..120159455-chr11:120163626..120165880,3	K562	blood:
5	chr11:120163792..120168404-chr11:120169163..120175266,6	MCF-7	breast:
6	chr11:120107031..120108654-chr11:120163795..120166406,2	MCF-7	breast:
7	chr11:120105986..120110139-chr11:120162692..120168380,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10750169	1.00[ASN][1000 genomes]
rs11217802	0.81[EUR][1000 genomes]
rs11217803	0.81[EUR][1000 genomes]
rs11217804	0.81[EUR][1000 genomes]
rs11603274	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603757	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225696	0.81[EUR][1000 genomes]
rs17123780	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1941406	1.00[ASN][1000 genomes]
rs1941411	1.00[ASN][1000 genomes]
rs2015914	1.00[ASN][1000 genomes]
rs2096882	1.00[ASN][1000 genomes]
rs2715883	1.00[ASN][1000 genomes]
rs2715888	1.00[ASN][1000 genomes]
rs2847494	1.00[ASN][1000 genomes]
rs2847495	1.00[ASN][1000 genomes]
rs2847502	1.00[ASN][1000 genomes]
rs4142654	0.81[EUR][1000 genomes]
rs4936514	0.85[EUR][1000 genomes]
rs4938794	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589804	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]
rs7484249	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120161200-120166400	Enhancers	Duodenum Mucosa	Duodenum
2	chr11:120162400-120165000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:120162400-120165800	Weak transcription	Stomach Mucosa	stomach
4	chr11:120162600-120166800	Enhancers	Placenta	Placenta
5	chr11:120163400-120165200	Bivalent Enhancer	NHEK	skin
6	chr11:120163600-120166800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:120163800-120164200	Enhancers	Hela-S3	cervix
8	chr11:120163800-120164600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
9	chr11:120163800-120164800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr11:120163800-120164800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
11	chr11:120163800-120166600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:120164000-120165000	Weak transcription	Fetal Intestine Small	intestine

Quick Search: