Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:120105158..120109707-chr11:120158183..120163088,7	MCF-7	breast:
2	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
3	chr11:120151774..120154252-chr11:120159688..120162065,3	K562	blood:
4	chr11:120106473..120108744-chr11:120160537..120163342,3	MCF-7	breast:
5	chr11:120159549..120163046-chr11:120164212..120166890,3	K562	blood:

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10750169	1.00[ASN][1000 genomes]
rs11217802	0.81[EUR][1000 genomes]
rs11217803	0.81[EUR][1000 genomes]
rs11217804	0.81[EUR][1000 genomes]
rs11603274	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603307	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603757	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607289	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225696	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17123780	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1941406	1.00[ASN][1000 genomes]
rs1941411	1.00[ASN][1000 genomes]
rs2015914	1.00[ASN][1000 genomes]
rs2096882	1.00[ASN][1000 genomes]
rs2715883	1.00[ASN][1000 genomes]
rs2715888	1.00[ASN][1000 genomes]
rs2847494	1.00[ASN][1000 genomes]
rs2847495	1.00[ASN][1000 genomes]
rs2847502	1.00[ASN][1000 genomes]
rs4142654	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4936514	0.85[EUR][1000 genomes]
rs4938794	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]
rs7484249	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120159400-120162600	Weak transcription	Placenta	Placenta
2	chr11:120159600-120163800	Weak transcription	Hela-S3	cervix
3	chr11:120160800-120161800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:120161000-120162200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:120161200-120166400	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:120161400-120162200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:120161400-120162400	Enhancers	Fetal Intestine Large	intestine
8	chr11:120161600-120162200	Enhancers	Liver	Liver
9	chr11:120161600-120162400	Enhancers	Fetal Intestine Small	intestine
10	chr11:120161600-120162400	Enhancers	Stomach Mucosa	stomach

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