Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:120141543..120143317-chr11:120150505..120153667,3	K562	blood:
2	chr11:120114133..120115975-chr11:120140690..120143649,2	K562	blood:
3	chr11:120136784..120138496-chr11:120141359..120143547,2	MCF-7	breast:
4	chr11:120124373..120127178-chr11:120140443..120143184,2	MCF-7	breast:
5	chr11:120139878..120142580-chr11:120145353..120147153,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10750169	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892559	1.00[CHB][hapmap]
rs11217817	1.00[CHB][hapmap]
rs11603274	1.00[ASN][1000 genomes]
rs11603307	1.00[ASN][1000 genomes]
rs11603757	1.00[ASN][1000 genomes]
rs11607289	1.00[ASN][1000 genomes]
rs12364701	1.00[CHB][hapmap]
rs1941406	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015914	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096882	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155808	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2155809	1.00[CHB][hapmap]
rs2715881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2715883	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715888	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847494	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847495	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2847502	0.95[CEU][hapmap];1.00[ASN][1000 genomes]
rs4938794	1.00[ASN][1000 genomes]
rs6589804	1.00[ASN][1000 genomes]
rs7119027	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]
rs753309	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120131600-120142200	Weak transcription	Esophagus	oesophagus
2	chr11:120137400-120152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120140400-120142200	Weak transcription	HMEC	breast
4	chr11:120141400-120142400	Enhancers	NHEK	skin
5	chr11:120141600-120143000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:120141800-120143800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:120142000-120142600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:120142000-120143800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:120142000-120144400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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