Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120134228..120136600-chr11:120143810..120145583,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10750169	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10892551	1.00[CHD][hapmap]
rs10892559	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11217817	1.00[CHB][hapmap]
rs11603274	1.00[ASN][1000 genomes]
rs11603307	1.00[ASN][1000 genomes]
rs11603757	1.00[ASN][1000 genomes]
rs11607289	1.00[ASN][1000 genomes]
rs12364701	1.00[CHB][hapmap]
rs1941406	1.00[ASN][1000 genomes]
rs1941411	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015914	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096882	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155808	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2155809	1.00[CHB][hapmap]
rs2715881	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap]
rs2715882	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2715883	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715888	1.00[ASN][1000 genomes]
rs2847494	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847502	0.82[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[ASN][1000 genomes]
rs4938794	1.00[ASN][1000 genomes]
rs6589804	1.00[ASN][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]
rs7484249	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs882856	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120131600-120142200	Weak transcription	Esophagus	oesophagus
2	chr11:120131800-120136600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:120132200-120136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120132400-120136600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:120132600-120136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:120132600-120136400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:120132600-120136400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:120132800-120136200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:120132800-120136400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:120132800-120136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:120132800-120136400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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