Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:120124373..120127178-chr11:120140443..120143184,2	MCF-7	breast:
2	chr11:120106000..120109277-chr11:120123883..120131527,10	K562	blood:
3	chr11:120124199..120127517-chr11:120128190..120131008,4	K562	blood:

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10750169	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603274	1.00[ASN][1000 genomes]
rs11603307	1.00[ASN][1000 genomes]
rs11603757	1.00[ASN][1000 genomes]
rs11607289	1.00[ASN][1000 genomes]
rs1941406	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941411	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015914	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096882	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155808	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2715881	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2715883	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847494	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847495	1.00[ASN][1000 genomes]
rs2847502	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938794	1.00[ASN][1000 genomes]
rs6589804	1.00[ASN][1000 genomes]
rs7119027	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]
rs7484249	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753309	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120117000-120125400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:120119800-120125000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:120120800-120125000	Weak transcription	Brain Germinal Matrix	brain
4	chr11:120121000-120125000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:120121200-120125000	Weak transcription	GM12878-XiMat	blood
6	chr11:120121600-120126800	Weak transcription	Right Ventricle	heart
7	chr11:120123600-120125400	Weak transcription	Fetal Brain Female	brain
8	chr11:120123800-120127200	Weak transcription	Right Atrium	heart
9	chr11:120124400-120125000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120124400-120125000	Weak transcription	Fetal Brain Male	brain
11	chr11:120124600-120125000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:120124600-120125200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr11:120124600-120125600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:120124600-120126000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:120124800-120125800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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