Variant report

Variant	rs1941411
Chromosome Location	chr11:120130512-120130513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120119358..120123435-chr11:120128826..120131276,3	K562	blood:
2	chr11:120111344..120113154-chr11:120129036..120131490,2	K562	blood:
3	chr11:120085109..120087647-chr11:120129498..120132466,2	K562	blood:
4	chr11:120124199..120127517-chr11:120128190..120131008,4	K562	blood:
5	chr11:120054557..120056191-chr11:120128819..120131080,2	K562	blood:
6	chr11:120111222..120113154-chr11:120128592..120130536,2	K562	blood:
7	chr11:120106000..120109277-chr11:120123883..120131527,10	K562	blood:
8	chr11:120119508..120122030-chr11:120129146..120131276,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137699	Chromatin interaction
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10750169	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892551	1.00[CHD][hapmap]
rs10892559	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11217817	1.00[CHB][hapmap]
rs11603274	1.00[ASN][1000 genomes]
rs11603307	1.00[ASN][1000 genomes]
rs11603757	1.00[ASN][1000 genomes]
rs11607289	1.00[ASN][1000 genomes]
rs12364701	1.00[CHB][hapmap]
rs1941406	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015914	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096882	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2155809	1.00[CHB][hapmap]
rs2715881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2715882	0.80[EUR][1000 genomes]
rs2715883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715888	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847495	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847502	0.95[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938794	1.00[ASN][1000 genomes]
rs6589804	1.00[ASN][1000 genomes]
rs7119027	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73008710	1.00[ASN][1000 genomes]
rs7484249	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753309	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs882856	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120127000-120131000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:120127000-120132000	Weak transcription	Brain Germinal Matrix	brain
3	chr11:120127400-120130600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:120127600-120132400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:120127800-120132400	Weak transcription	Right Atrium	heart
6	chr11:120128400-120131400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:120129400-120132800	Enhancers	Placenta	Placenta
8	chr11:120130000-120130800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:120130200-120130600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120130400-120131400	Enhancers	HUES6 Cell Line	embryonic stem cell

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