Variant report

Variant	rs11217799
Chromosome Location	chr11:120164954-120164955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120159375..120161536-chr11:120164947..120166851,2	MCF-7	breast:
2	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
3	chr11:120104352..120110604-chr11:120164438..120175098,43	MCF-7	breast:
4	chr11:120161703..120167886-chr11:120168928..120172296,6	K562	blood:
5	chr11:120152442..120154565-chr11:120163007..120165432,2	K562	blood:
6	chr11:120159549..120163046-chr11:120164212..120166890,3	K562	blood:
7	chr11:120100658..120101184-chr11:120164657..120165474,2	MCF-7	breast:
8	chr11:120155722..120159455-chr11:120163626..120165880,3	K562	blood:
9	chr11:120163792..120168404-chr11:120169163..120175266,6	MCF-7	breast:
10	chr11:120107031..120108654-chr11:120163795..120166406,2	MCF-7	breast:
11	chr11:120105986..120110139-chr11:120162692..120168380,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11217786	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11217797	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217802	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217803	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217804	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11217805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217806	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11217807	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11217813	0.91[GIH][hapmap]
rs12224052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12225696	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12226432	1.00[CEU][hapmap]
rs12418329	1.00[ASW][hapmap]
rs12576881	0.91[GIH][hapmap]
rs1551240	1.00[CEU][hapmap]
rs2298579	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs3824883	0.86[JPT][hapmap]
rs4142654	1.00[ASW][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4616049	0.81[JPT][hapmap]
rs744984	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120161200-120166400	Enhancers	Duodenum Mucosa	Duodenum
2	chr11:120162400-120165000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:120162400-120165800	Weak transcription	Stomach Mucosa	stomach
4	chr11:120162600-120166800	Enhancers	Placenta	Placenta
5	chr11:120163400-120165200	Bivalent Enhancer	NHEK	skin
6	chr11:120163600-120166800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:120163800-120166600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:120164000-120165000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:120164400-120166600	Enhancers	Hela-S3	cervix

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