Variant report

Variant	rs11217954
Chromosome Location	chr11:120538307-120538308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10082646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10082698	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502240	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790390	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790391	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790392	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10790393	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790394	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892593	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892594	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10892595	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892596	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892597	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892598	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892599	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892600	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892601	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892602	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892603	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892604	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892605	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892610	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892611	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217951	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217953	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217955	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217957	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217958	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217959	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217960	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217961	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217962	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217964	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217965	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217970	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217972	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603586	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607732	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224951	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224987	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225737	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225752	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360673	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362311	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362348	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363187	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256992	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268524	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367954	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628679	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61601696	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900956	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902671	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902672	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902674	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934805	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934825	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934830	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934908	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935087	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120514400-120543600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120520000-120543800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120533200-120551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:120533400-120543800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120536600-120538400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:120537400-120538400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:120537600-120538600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:120537800-120538400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:120537800-120538400	Enhancers	Ovary	ovary
10	chr11:120538000-120538400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:120538000-120538400	Enhancers	Pancreas	Pancrea
12	chr11:120538000-120538400	Bivalent Enhancer	Right Ventricle	heart
13	chr11:120538000-120538600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:120538000-120538600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:120538000-120538600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:120538200-120538400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr11:120538200-120538400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:120538200-120538400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:120538200-120538400	Bivalent Enhancer	NH-A	brain
20	chr11:120538200-120538600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
21	chr11:120538200-120540000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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