Variant report

Variant	rs11217967
Chromosome Location	chr11:120548795-120548796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120547489..120549157-chr11:120552655..120555191,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736503	0.82[ASN][1000 genomes]
rs10790389	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs10790395	0.95[CHB][hapmap];0.94[ASN][1000 genomes]
rs10790396	0.94[ASN][1000 genomes]
rs10790397	0.93[ASN][1000 genomes]
rs10790398	0.95[CHB][hapmap];0.94[ASN][1000 genomes]
rs10790399	0.93[ASN][1000 genomes]
rs10892608	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs10892609	0.95[CHB][hapmap];0.94[ASN][1000 genomes]
rs10892612	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs11217950	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11217956	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217968	0.83[ASN][1000 genomes]
rs11217971	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11820810	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12365194	0.82[ASN][1000 genomes]
rs12574186	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs2000868	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2000869	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2000870	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35101469	0.95[ASN][1000 genomes]
rs4417279	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7119539	0.83[ASN][1000 genomes]
rs7119655	0.83[ASN][1000 genomes]
rs7932158	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7934734	0.81[ASN][1000 genomes]
rs7935000	0.83[ASN][1000 genomes]
rs7947520	0.91[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120533200-120551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:120538600-120551800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:120538600-120552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120544400-120552200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:120545800-120552200	Weak transcription	Ovary	ovary
6	chr11:120547000-120551000	Weak transcription	HepG2	liver
7	chr11:120548200-120552000	Weak transcription	Fetal Lung	lung

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