Variant report

Variant	rs2000870
Chromosome Location	chr11:120539693-120539694
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10736503	0.81[ASN][1000 genomes]
rs10790389	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs10790395	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs10790396	0.93[ASN][1000 genomes]
rs10790397	0.93[ASN][1000 genomes]
rs10790398	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs10790399	0.93[ASN][1000 genomes]
rs10892608	0.87[CHB][hapmap];0.92[ASN][1000 genomes]
rs10892609	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs10892612	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs11217950	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11217956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217967	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217968	0.80[ASN][1000 genomes]
rs11217971	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs11820810	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12365194	0.81[ASN][1000 genomes]
rs12574186	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs2000868	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs2000869	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35101469	0.92[ASN][1000 genomes]
rs4417279	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7119539	0.80[ASN][1000 genomes]
rs7119655	0.80[ASN][1000 genomes]
rs7932158	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7934734	0.82[ASN][1000 genomes]
rs7935000	0.81[ASN][1000 genomes]
rs7947520	0.91[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120514400-120543600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120520000-120543800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120533200-120551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:120533400-120543800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120538200-120540000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:120538400-120545000	Weak transcription	Ovary	ovary
7	chr11:120538600-120551800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:120538600-120552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links