Variant report

Variant	rs11218092
Chromosome Location	chr11:120857051-120857052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120855990..120858332-chr11:120862136..120864842,2	K562	blood:
2	chr11:120848484..120850424-chr11:120855455..120857726,2	MCF-7	breast:
3	chr11:120855588..120857479-chr11:120894477..120896539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154114	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11607159	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12796298	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12796457	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1789661	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs477389	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs478978	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936570	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs499804	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs526397	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs540787	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs542378	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs543181	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs570373	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs582800	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs591671	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs598804	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607142	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs608891	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903169	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61903170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs642280	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645156	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs645545	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs658696	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66550414	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs674352	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs684613	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688893	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs734167	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73585281	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73585283	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120856000-120857400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:120856000-120857600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr11:120856200-120857200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:120856200-120857400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:120856200-120857400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr11:120856200-120857400	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr11:120856200-120857400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:120856200-120857400	Bivalent/Poised TSS	A549	lung
9	chr11:120856400-120857200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:120856400-120857200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:120856400-120857200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:120856400-120857200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:120856400-120857200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:120856400-120857200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
15	chr11:120856400-120857200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:120856400-120857200	Active TSS	Brain Angular Gyrus	brain
17	chr11:120856400-120857200	Active TSS	Brain Anterior Caudate	brain
18	chr11:120856400-120857200	Active TSS	Brain Cingulate Gyrus	brain
19	chr11:120856400-120857200	Active TSS	Brain Hippocampus Middle	brain
20	chr11:120856400-120857200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:120856400-120857200	Active TSS	Brain Substantia Nigra	brain
22	chr11:120856400-120857200	Active TSS	Left Ventricle	heart
23	chr11:120856400-120857200	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr11:120856400-120857200	Bivalent/Poised TSS	Osteobl	bone
25	chr11:120856400-120857400	Active TSS	H9 Cell Line	embryonic stem cell
26	chr11:120856400-120857400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:120856400-120857400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:120856400-120857400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr11:120856400-120857400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr11:120856400-120857400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:120856400-120857400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:120856400-120857400	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr11:120856400-120857400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
34	chr11:120856400-120857400	Active TSS	Colon Smooth Muscle	Colon
35	chr11:120856400-120857400	Active TSS	HSMM	muscle
36	chr11:120856400-120858000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr11:120856600-120857200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr11:120856600-120857200	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr11:120856600-120857200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr11:120856600-120857200	Flanking Active TSS	Liver	Liver
41	chr11:120856600-120857200	Active TSS	Duodenum Mucosa	Duodenum
42	chr11:120856600-120857200	Active TSS	Pancreas	Pancrea
43	chr11:120856600-120857200	Transcr. at gene 5' and 3'	Right Atrium	heart
44	chr11:120856600-120857200	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:120856600-120857200	Bivalent/Poised TSS	Thymus	Thymus
46	chr11:120856600-120857200	Flanking Active TSS	HMEC	breast
47	chr11:120856600-120857400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:120856600-120857400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
49	chr11:120856600-120857400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:120856600-120857400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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