Variant report

Variant	rs1789661
Chromosome Location	chr11:120827021-120827022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11218062	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11218065	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11218067	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11218073	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11218081	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218082	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218092	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12225735	0.81[AMR][1000 genomes]
rs12796452	0.84[AMR][1000 genomes]
rs12805801	0.84[AMR][1000 genomes]
rs478978	0.82[AMR][1000 genomes]
rs4936564	0.84[AMR][1000 genomes]
rs4936567	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs570373	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs582800	0.83[EUR][1000 genomes]
rs607142	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs608891	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61903170	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs642280	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs645156	0.81[AMR][1000 genomes]
rs645545	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs684613	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs688893	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs732481	0.93[ASN][1000 genomes]
rs734167	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120823600-120827400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:120823600-120827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:120823600-120827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:120823600-120827400	Weak transcription	Spleen	Spleen
5	chr11:120823600-120827400	Weak transcription	HMEC	breast
6	chr11:120823600-120827600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:120823600-120827600	Weak transcription	GM12878-XiMat	blood
8	chr11:120823600-120827600	Weak transcription	NHEK	skin
9	chr11:120823600-120827800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:120823600-120833200	Weak transcription	Ovary	ovary
11	chr11:120823600-120841600	Weak transcription	Brain Substantia Nigra	brain
12	chr11:120823800-120827400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:120823800-120827400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:120823800-120827400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:120823800-120827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:120823800-120827400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:120823800-120827600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:120823800-120827800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:120823800-120837000	Weak transcription	Brain Angular Gyrus	brain
20	chr11:120824000-120827200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:120824000-120827400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:120824000-120827400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:120824000-120827400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:120824000-120827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:120824000-120827600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:120824000-120827800	Weak transcription	Fetal Lung	lung
27	chr11:120824000-120836000	Weak transcription	Brain Anterior Caudate	brain
28	chr11:120824000-120838600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:120824000-120845200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:120824200-120827400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:120824200-120827800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:120824200-120828000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:120824400-120827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:120824400-120827400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:120824400-120827600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:120824400-120827600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:120824400-120827600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:120824600-120827200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:120824600-120827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:120824800-120827400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:120825000-120827800	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:120825000-120830000	Weak transcription	Fetal Brain Female	brain
43	chr11:120825600-120827400	Weak transcription	Fetal Brain Male	brain
44	chr11:120826400-120828000	Weak transcription	Lung	lung
45	chr11:120826400-120829600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:120826600-120829000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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