Variant report

Variant	rs12796452
Chromosome Location	chr11:120800956-120800957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120627392..120628392-chr11:120800177..120801006,5	MCF-7	breast:
2	chr11:120381486..120382067-chr11:120800468..120801115,2	MCF-7	breast:
3	chr11:120629321..120630296-chr11:120800283..120801141,2	MCF-7	breast:
4	chr11:120381525..120382311-chr11:120800501..120801091,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11218062	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11218065	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11218067	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11218073	0.94[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11218081	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11218082	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs12225735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789661	0.84[AMR][1000 genomes]
rs4643089	1.00[YRI][hapmap]
rs477389	0.84[CEU][hapmap]
rs478978	0.84[CEU][hapmap]
rs4936564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936567	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs499804	0.82[CEU][hapmap]
rs526397	0.83[CEU][hapmap]
rs540787	0.82[CEU][hapmap]
rs570373	0.86[CEU][hapmap]
rs607142	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs608891	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs642280	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs645156	0.82[CEU][hapmap]
rs645545	0.89[CEU][hapmap]
rs658696	0.82[CEU][hapmap]
rs684613	0.94[CEU][hapmap]
rs688893	0.81[AMR][1000 genomes]
rs734167	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120799600-120801000	Enhancers	Fetal Brain Male	brain
2	chr11:120799800-120801000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:120800200-120801200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120800200-120803200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120800200-120805000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:120800200-120805000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120800200-120808200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:120800400-120808400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:120800600-120801000	Enhancers	Fetal Lung	lung
10	chr11:120800600-120802600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:120800600-120802600	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:120800600-120815200	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:120800800-120805000	Weak transcription	H1 Cell Line	embryonic stem cell

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