Variant report

Variant	rs11218065
Chromosome Location	chr11:120808289-120808290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:120808071-120808824	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
HMGB1P42	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11218062	0.94[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11218067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11218073	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11218081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11218082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12225735	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12796452	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12805801	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1789661	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4643089	1.00[YRI][hapmap]
rs477389	0.89[CEU][hapmap]
rs478978	0.89[CEU][hapmap]
rs4936564	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4936567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs499804	0.88[CEU][hapmap]
rs526397	0.88[CEU][hapmap]
rs540787	0.88[CEU][hapmap]
rs570373	0.93[CEU][hapmap]
rs607142	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs608891	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs642280	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes]
rs645156	0.88[CEU][hapmap]
rs645545	0.94[CEU][hapmap]
rs658696	0.88[CEU][hapmap]
rs684613	1.00[CEU][hapmap]
rs688893	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs734167	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120800400-120808400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:120800600-120815200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:120801000-120811400	Weak transcription	Fetal Lung	lung
4	chr11:120802200-120823200	Weak transcription	Ovary	ovary
5	chr11:120803600-120808400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:120805400-120809200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:120805400-120809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:120808200-120808400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:120808200-120808600	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:120808200-120808600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:120808200-120808600	Enhancers	Brain Substantia Nigra	brain

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