Variant report

Variant	rs12805801
Chromosome Location	chr11:120798482-120798483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120792557..120794289-chr11:120797109..120799163,2	K562	blood:
2	chr11:120792557..120795244-chr11:120797109..120800513,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11218062	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11218065	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11218067	0.93[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11218073	0.93[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11218081	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes]
rs11218082	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs12225735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789661	0.84[AMR][1000 genomes]
rs477389	0.81[CEU][hapmap]
rs478978	0.81[CEU][hapmap]
rs4936564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4936567	0.93[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs570373	0.83[CEU][hapmap]
rs607142	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs608891	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs642280	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs645545	0.87[CEU][hapmap]
rs684613	0.93[CEU][hapmap]
rs688893	0.81[AMR][1000 genomes]
rs734167	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:120779800-120799800	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:120795000-120799600	Weak transcription	Fetal Brain Male	brain
4	chr11:120796200-120799600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:120796400-120799400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:120797000-120800600	Weak transcription	Fetal Lung	lung

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