Variant report

Variant	rs570373
Chromosome Location	chr11:120846239-120846240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11218062	0.86[CEU][hapmap]
rs11218065	0.93[CEU][hapmap]
rs11218067	0.93[CEU][hapmap]
rs11218073	0.93[CEU][hapmap]
rs11218081	0.92[CEU][hapmap]
rs11218082	0.93[CEU][hapmap]
rs11218092	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607159	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12225735	0.92[CEU][hapmap]
rs12796298	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12796452	0.86[CEU][hapmap]
rs12796457	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12805801	0.83[CEU][hapmap]
rs1789661	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs477389	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs478978	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936564	0.86[CEU][hapmap]
rs4936567	0.93[CEU][hapmap]
rs4936570	0.94[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs499804	0.93[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs526397	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs540787	0.93[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs542378	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs543181	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs582800	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs591671	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs598804	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs607142	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs608891	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61903169	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61903170	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs642280	0.93[CEU][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs645156	0.93[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs645545	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs658696	0.93[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66550414	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs674352	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs684613	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688893	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs734167	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73585281	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73585283	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120833400-120856400	Weak transcription	Ovary	ovary
2	chr11:120836800-120856400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:120842400-120846600	Enhancers	HSMMtube	muscle
4	chr11:120845000-120847800	Enhancers	HSMM	muscle
5	chr11:120845200-120846400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:120845200-120846800	Enhancers	Fetal Brain Male	brain
7	chr11:120845400-120846400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:120845400-120846400	Enhancers	Fetal Brain Female	brain
9	chr11:120845600-120846600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:120846000-120849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:120846000-120856000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:120846000-120856000	Weak transcription	Fetal Lung	lung
13	chr11:120846200-120848000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links