Variant report

Variant	rs11218081
Chromosome Location	chr11:120825332-120825333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM29-8	chr11:120823250-120825818	ucscGeneNc_uc001pxw_1

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11218062	0.94[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11218065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11218067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218073	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225735	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes]
rs12796452	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12805801	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes]
rs1789661	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477389	0.88[CEU][hapmap]
rs478978	0.88[CEU][hapmap]
rs4936564	0.94[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes]
rs4936567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs499804	0.86[CEU][hapmap]
rs526397	0.87[CEU][hapmap]
rs540787	0.86[CEU][hapmap]
rs570373	0.92[CEU][hapmap]
rs607142	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs608891	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs642280	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs645156	0.86[CEU][hapmap]
rs645545	0.93[CEU][hapmap]
rs658696	0.86[CEU][hapmap]
rs684613	1.00[CEU][hapmap]
rs688893	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs732481	0.86[ASN][1000 genomes]
rs734167	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120822800-120825400	Enhancers	Fetal Heart	heart
2	chr11:120823200-120825600	Enhancers	Fetal Brain Male	brain
3	chr11:120823600-120826000	Weak transcription	Lung	lung
4	chr11:120823600-120827400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:120823600-120827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:120823600-120827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:120823600-120827400	Weak transcription	Spleen	Spleen
8	chr11:120823600-120827400	Weak transcription	HMEC	breast
9	chr11:120823600-120827600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:120823600-120827600	Weak transcription	GM12878-XiMat	blood
11	chr11:120823600-120827600	Weak transcription	NHEK	skin
12	chr11:120823600-120827800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:120823600-120833200	Weak transcription	Ovary	ovary
14	chr11:120823600-120841600	Weak transcription	Brain Substantia Nigra	brain
15	chr11:120823800-120827400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr11:120823800-120827400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr11:120823800-120827400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:120823800-120827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:120823800-120827400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:120823800-120827600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:120823800-120827800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:120823800-120837000	Weak transcription	Brain Angular Gyrus	brain
23	chr11:120824000-120826600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:120824000-120827200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:120824000-120827400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:120824000-120827400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:120824000-120827400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:120824000-120827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:120824000-120827600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:120824000-120827800	Weak transcription	Fetal Lung	lung
31	chr11:120824000-120836000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:120824000-120838600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:120824000-120845200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:120824200-120825800	Weak transcription	Gastric	stomach
35	chr11:120824200-120827400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:120824200-120827800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:120824200-120828000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:120824400-120827400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:120824400-120827400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:120824400-120827600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:120824400-120827600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:120824400-120827600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:120824600-120827200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:120824600-120827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:120824800-120827400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:120825000-120826200	Weak transcription	Brain Germinal Matrix	brain
47	chr11:120825000-120827800	Weak transcription	Fetal Muscle Leg	muscle
48	chr11:120825000-120830000	Weak transcription	Fetal Brain Female	brain
49	chr11:120825200-120825400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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