Variant report

Variant	rs732481
Chromosome Location	chr11:120828855-120828856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11218081	0.86[ASN][1000 genomes]
rs11218082	0.86[ASN][1000 genomes]
rs1789661	0.93[ASN][1000 genomes]
rs607142	0.95[ASN][1000 genomes]
rs608891	0.97[ASN][1000 genomes]
rs642280	0.97[ASN][1000 genomes]
rs688893	0.98[ASN][1000 genomes]
rs734167	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120823600-120833200	Weak transcription	Ovary	ovary
2	chr11:120823600-120841600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120823800-120837000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:120824000-120836000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:120824000-120838600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:120824000-120845200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:120825000-120830000	Weak transcription	Fetal Brain Female	brain
8	chr11:120826400-120829600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:120826600-120829000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:120827200-120829000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:120827400-120829000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr11:120827400-120829000	Enhancers	Fetal Brain Male	brain
13	chr11:120827400-120829200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:120827400-120829200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:120827400-120829200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:120827400-120829600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:120828200-120829000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:120828400-120834000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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