Variant report

Variant	rs11218213
Chromosome Location	chr11:121101852-121101853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11218195	0.82[EUR][1000 genomes]
rs12787035	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4280006	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121097800-121102400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:121099600-121103800	Enhancers	Liver	Liver
3	chr11:121100600-121103000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:121100600-121103000	Enhancers	Left Ventricle	heart
5	chr11:121100600-121107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:121101000-121102000	Enhancers	Fetal Intestine Small	intestine
7	chr11:121101000-121102400	Enhancers	Fetal Intestine Large	intestine
8	chr11:121101000-121102800	Enhancers	Right Atrium	heart
9	chr11:121101000-121103000	Enhancers	Right Ventricle	heart
10	chr11:121101200-121102200	Enhancers	Fetal Heart	heart
11	chr11:121101200-121102400	Weak transcription	Gastric	stomach
12	chr11:121101200-121102400	Weak transcription	Pancreas	Pancrea
13	chr11:121101200-121104400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:121101200-121104600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:121101600-121102200	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:121101600-121103200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links