Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121081943..121084419-chr11:121095777..121097754,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10892677	0.86[CEU][hapmap]
rs11218161	0.86[CEU][hapmap]
rs11218190	0.85[EUR][1000 genomes]
rs11218195	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11218213	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12792976	0.81[EUR][1000 genomes]
rs12793460	0.81[EUR][1000 genomes]
rs12802185	0.94[JPT][hapmap]
rs1939935	0.82[EUR][1000 genomes]
rs2186747	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs2276057	0.81[EUR][1000 genomes]
rs4280006	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs475731	0.88[JPT][hapmap]
rs520805	0.82[JPT][hapmap]
rs583842	0.82[JPT][hapmap]
rs612969	0.88[JPT][hapmap]
rs632121	0.88[JPT][hapmap]
rs636575	0.82[JPT][hapmap]
rs659042	0.82[JPT][hapmap]
rs7129267	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	esv2761715	chr11:121073605-121083183	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12787035	CRTAM	cis	parietal	SCAN
rs12787035	TMEM25	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121077800-121084000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:121078600-121083200	Weak transcription	HSMMtube	muscle
3	chr11:121078800-121084000	Weak transcription	Liver	Liver
4	chr11:121081600-121083200	Weak transcription	GM12878-XiMat	blood
5	chr11:121082400-121084200	Enhancers	HSMM	muscle
6	chr11:121082600-121083400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:121082600-121083400	Enhancers	Brain Germinal Matrix	brain
8	chr11:121082600-121083800	Weak transcription	Fetal Heart	heart

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