Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10892677	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11218161	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11218177	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11218178	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11218190	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11218213	0.82[EUR][1000 genomes]
rs12787035	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12792976	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12793460	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12802185	0.82[JPT][hapmap]
rs1939935	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2186747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2276057	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4280006	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs475731	0.88[JPT][hapmap]
rs520805	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs583842	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs612969	0.88[JPT][hapmap]
rs632121	0.88[JPT][hapmap]
rs636575	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs659042	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs7129267	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11218195	CD3G	cis	cerebellum	SCAN
rs11218195	TMEM25	cis	parietal	SCAN
rs11218195	CRTAM	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121052800-121065600	Weak transcription	Gastric	stomach
2	chr11:121053800-121065600	Weak transcription	Pancreas	Pancrea
3	chr11:121055400-121065600	Weak transcription	Ovary	ovary
4	chr11:121055600-121065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:121056800-121065400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:121056800-121065600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:121058000-121065400	Weak transcription	Fetal Lung	lung
8	chr11:121058800-121069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:121061800-121063200	Enhancers	Right Atrium	heart
10	chr11:121062600-121063000	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:121062600-121063200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:121062600-121065600	Weak transcription	HSMMtube	muscle
13	chr11:121062600-121070000	Weak transcription	Fetal Heart	heart

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